Browse Element(s) Details


Os.12722.1.S1_at

Description gb:AK072631.1
DB_XREF= gi:32982654
TID=Os.12722.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132I18, full insert sequence.
FL= gb:AK072631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3559011/11thioesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35570Os.11752.1.S1_at11/114+21495027..21500744Regulator of chromosome condensation family protein, expressed
LOC_Os04g35580OsAffx.4002.1.S1_s_at11/114+21505376..21506508expressed protein
LOC_Os04g35590Os.12722.1.S1_at11/114+21508069..21511229thioesterase family protein, expressed
LOC_Os04g35600Os.53966.1.S1_at11/114+21512544..21515611Protein disulfide-isomerase precursor, putative, expressed
LOC_Os04g35610OsAffx.14160.1.S1_at11/114+21516219..21518276pentatricopeptide, putative
LOC_Os04g35620OsAffx.14161.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.27502.1.S1_at11/114+21519078..21523579expressed protein
LOC_Os04g35620Os.17282.1.S1_at2/114+21519078..21523579expressed protein
LOC_Os04g35630OsAffx.14162.1.S1_at11/114+21527440..21528600hypothetical protein
LOC_Os04g35640Os.2741.4.S1_x_at1/114+21529430..21531771retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12722.1.S1_at--609--1611Chr04:21508596..21508620 (25 bp)
AGCTGTTGCGCGCTGGAAAATCAGT
LOC_Os04g35590
Os.12722.1.S1_at--862--3071Chr04:21508578..21508602 (25 bp)
AATCAGTCGGTGTTGTCTCTGTTGA
LOC_Os04g35590
Os.12722.1.S1_at--1105--2231Chr04:21508531..21508555 (25 bp)
AAATTGATAGCGCAGGCCCGCCATA
LOC_Os04g35590
Os.12722.1.S1_at--329--291Chr04:21508509..21508533 (25 bp)
ATACCAAGTACCTCGCTGTATCTAG
LOC_Os04g35590
Os.12722.1.S1_at--210--10031Chr04:21508429..21508453 (25 bp)
TAGACCTTGTCATACGCTGTCAGTG
LOC_Os04g35590
Os.12722.1.S1_at--1050--6391Chr04:21508383..21508407 (25 bp)
GATCGTGTCCATCTCAAACGCATAG
LOC_Os04g35590
Os.12722.1.S1_at--1019--6591Chr04:21508359..21508383 (25 bp)
GATTGATGGCGGTTCTGTTATTTAT
LOC_Os04g35590
Os.12722.1.S1_at--371--3011Chr04:21508279..21508303 (25 bp)
AATCCTCCTAAATTCATACCCAACT
LOC_Os04g35590
Os.12722.1.S1_at--53--2131Chr04:21508240..21508264 (25 bp)
ACAGGACCTCAGAAATTACGCAACT
LOC_Os04g35590
Os.12722.1.S1_at--298--351Chr04:21508154..21508178 (25 bp)
ATAACTGTAGTCTTCCCTCAGCTAG
LOC_Os04g35590
Os.12722.1.S1_at--389--7751Chr04:21508129..21508153 (25 bp)
GGTGATTCCCTCTGTTCATATGATC
LOC_Os04g35590
Target Sequence 
AGCTGTTGCGCGCTGGAAAATCAGTCGGTGTTGTCTCTGTTGATTTCAGGAAGAAAAAGACAGGCAAATTGATAGCGCAG
GCCCGCCATACCAAGTACCTCGCTGTATCTAGCAAACTATGAGGTTTTCCTAGATACCAAAATGATCATGTCAAACTCTT
TACTATCTAGACCTTGTCATACGCTGTCAGTGCTGTATATTGTTCTAAAATAGGATCGTGTCCATCTCAAACGCATAGAT
TGATGGCGGTTCTGTTATTTATATTGCTTAGGTCAATTCCTATTGGGAATGAAGGGATTTCACAGAAAATGGGGGTAAAT
CCTCCTAAATTCATACCCAACTCTTCAGTTATACAAACAGGACCTCAGAAATTACGCAACTGGAAAATAAGAGTAGTTAA
GTACTCAAATCAGATTGCATTTGTGNCAATATNTTCGATTACATAACTGTAGTCTTCCCTCAGCTAGGGTGATTCCCTCT
GTTCATATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis