Browse Element(s) Details


Os.12761.1.S1_at

Description gb:AK102970.1
DB_XREF= gi:32988179
TID=Os.12761.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.12761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115J22, full insert sequence.
FL= gb:AK119160.1 gb:AK102798.1 gb:AK102970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4606011/11P21 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein
LOC_Os03g46046NANA3+25981759..25982339hypothetical protein
LOC_Os03g46052NANA3+25983378..25983992hypothetical protein
LOC_Os03g46060Os.12761.1.S1_at11/113+25987087..25987939P21 protein, putative, expressed
LOC_Os03g46070Os.459.1.S1_at10/113+25988565..25989483P21 protein, putative, expressed
LOC_Os03g46070Os.6867.1.S1_x_at1/113+25988565..25989483P21 protein, putative, expressed
LOC_Os03g46080Os.41695.5.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.3.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.2.S1_x_at9/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.4.S1_x_at1/113+26011884..26016524Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12761.1.S1_at--293--2931Chr03:25987522..25987546 (25 bp)
AAGGACGACTACTTCGACATCTCGC
LOC_Os03g46060
Os.12761.1.S1_at--986--2091Chr03:25987506..25987530 (25 bp)
ACATCTCGCTCGTGGATGGGTTCAA
LOC_Os03g46060
Os.12761.1.S1_at--816--8551Chr03:25987494..25987518 (25 bp)
TGGATGGGTTCAACGCGCCAATGGC
LOC_Os03g46060
Os.12761.1.S1_at--872--1271Chr03:25987407..25987431 (25 bp)
AGATCACGCTGCAGTGCCCCGGCGA
LOC_Os03g46060
Os.12761.1.S1_at--428--8411Chr03:25987329..25987353 (25 bp)
GGCCGACCAAGGACACGGAGTTCTT
LOC_Os03g46060
Os.12761.1.S1_at--407--1611Chr03:25987299..25987323 (25 bp)
AGCTGTGCCCGGAGACGGTCACCTA
LOC_Os03g46060
Os.12761.1.S1_at--220--9171Chr03:25987210..25987234 (25 bp)
TGCCCATGATGAGCTTGGTCTCGTA
LOC_Os03g46060
Os.12761.1.S1_at--1103--4911Chr03:25987198..25987222 (25 bp)
GCTTGGTCTCGTACAGGGACAGTAA
LOC_Os03g46060
Os.12761.1.S1_at--153--2531Chr03:25987172..25987196 (25 bp)
AACTATCTTAGTTCCTGTACTTGTA
LOC_Os03g46060
Os.12761.1.S1_at--497--7731Chr03:25987144..25987168 (25 bp)
GGTGGTAAATAAAACCTCGCACTGA
LOC_Os03g46060
Os.12761.1.S1_at--920--1751Chr03:25987131..25987155 (25 bp)
ACCTCGCACTGAGTGAATCACTTGT
LOC_Os03g46060
Target Sequence 
AAGGACGACTACTTCGACATCTCGCTCGTGGATGGGTTCAACGCGCCAATGGCCATCGTGCCGGCGGCGGCGGGCGGGCG
GCGGTGCCCCCGCGGCGGGCCTCGGTGCGCGGCGGAGATCACGCTGCAGTGCCCCGGCGAGCTGCGCGCCAAGGCCGGGT
GCAGCAACCCGTGCAGGGGGAACAGCACGTGCGGGCCGACCAAGGACACGGAGTTCTTCAAGAAGCTGTGCCCGGAGACG
GTCACCTACGCCCGGGACGGCCAAGGCACCACCTTCACCTGCCCCGCCGGCACCGACTACCAGATCGTCTTCTGCCCATG
ATGAGCTTGGTCTCGTACAGGGACAGTAATAACTATCTTAGTTCCTGTACTTGTATATGGTGGTAAATAAAACCTCGCAC
TGAGTGAATCACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis