Browse Element(s) Details


Os.459.1.S1_at

Description gb:U77656.1
DB_XREF= gi:2062386
TID=Os.459.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.459 (NCBI UniGene Cluster)
DEF=Oryza sativa pathogenesis-related thaumatin-like protein mRNA, complete cds.
PROD=pathogenesis-related thaumatin-like protein
FL= gb:U77656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4607010/11P21 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein
LOC_Os03g46046NANA3+25981759..25982339hypothetical protein
LOC_Os03g46052NANA3+25983378..25983992hypothetical protein
LOC_Os03g46060Os.12761.1.S1_at11/113+25987087..25987939P21 protein, putative, expressed
LOC_Os03g46070Os.459.1.S1_at10/113+25988565..25989483P21 protein, putative, expressed
LOC_Os03g46070Os.6867.1.S1_x_at1/113+25988565..25989483P21 protein, putative, expressed
LOC_Os03g46080Os.41695.5.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.3.S1_x_at10/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.2.S1_x_at9/113+26011884..26016524Transposable element protein, putative, MuDR
LOC_Os03g46080Os.41695.4.S1_x_at1/113+26011884..26016524Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.459.1.S1_at--496--2631Chr03:25989117..25989141 (25 bp)
AACCAGTTCAGCAACCTCGACTTCT
LOC_Os03g46070
Os.459.1.S1_at--437--2211Chr03:25988945..25988969 (25 bp)
ACAACGCGTGCACGGTGTTCAAGCA
LOC_Os03g46070
Os.459.1.S1_at--181--7151Chr03:25988766..25988790 (25 bp)
GTCTTCTGCCCATGAGGGACGATGA
LOC_Os03g46070
Os.459.1.S1_at--639--1071Chr03:25988752..25988776 (25 bp)
AGGGACGATGACTTGTTAGCTGGCA
LOC_Os03g46070
Os.459.1.S1_at--1073--5671Chr03:25988743..25988767 (25 bp)
GACTTGTTAGCTGGCATCTGATCGA
LOC_Os03g46070
Os.459.1.S1_at--1043--1611Chr03:25988735..25988759 (25 bp)
AGCTGGCATCTGATCGATGTGATCT
LOC_Os03g46070
Os.459.1.S1_at--931--3231Chr03:25988687..25988711 (25 bp)
CAAGCATGCATACTTTTTATGCGAG
LOC_Os03g46070
Os.459.1.S1_at--854--10331Chr03:25988672..25988696 (25 bp)
TTTATGCGAGTTTGTATCAGAATCA
LOC_Os03g46070
Os.459.1.S1_at--758--10031Chr03:25988585..25988609 (25 bp)
TAGTTTGGTTAATTACACAGGCATG
LOC_Os03g46070
Os.459.1.S1_at--44--131Chr03:25988574..25988598 (25 bp)
ATTACACAGGCATGAACGAATCCGT
LOC_Os03g46070
Os.459.1.S1_at--457--5451Chr03:25988565..25988585 (21 bp)
GAACGAATCCGTTCAAATTCTCGGA
NONE
Target Sequence 
AACCAGTTCAGCAACCTCGACTTCTTCGACATCTCCCTCATCGACGGATTCAACGTGCCCATGGACTTCCTCCCCGCCGG
CGACCGGGTGCGCAAGGGCGGGCCGCGGTGCGAGGCGGACGTGGCGGGGCAGTGCCCGAGCGAGCTGAGGGCGCCCGGCG
GGTGCAACAACGCGTGCACGGTGTTCAAGCAGGACCAGTACTGCTGCACCGGCTCGGCGGCGAACAACTGCGGCCCGACC
AACTACTCGCAGTTCTTCAAGGGGCTCTGCCCGGACGCCTACAGCTACCCCAAGGACGNCCAGACGAGCNCCTTCNCTTG
CCCGGCCGGCNCCAACTACCAGGTCGTCTTCTGCCCATGAGGGACGATGACTTGTTAGCTGGCATCTGATCGATGTGATC
TTGGTTAGATGTATACNCAATAAACAAGCATGCATACTTTTTATGCGAGTTTGTATCAGAATCATGAAGAGAAAAGTTAC
TCTGTAATAAAGTAAACCATTCAAAACTGNAGTGGTTTTTCACTTGTAGTTTGGTTAATTACACAGGCATGAACGAATCC
GTTCAAATTCTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis