Browse Element(s) Details


Os.12771.1.S1_at

Description gb:AK098940.1
DB_XREF= gi:32984149
TID=Os.12771.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.3 (P0518C01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043D06, full insert sequence.
FL= gb:AK058329.1 gb:AK098940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7391011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73870Os.35344.18.S1_x_at9/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870Os.35344.3.S1_x_at7/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870OsAffx.22940.5.S1_x_at2/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12771.1.S1_at--4--2791Chr01:43153765..43153789 (25 bp)
AAGAGCAGCTCTACAGGTGGCTCCG
LOC_Os01g73910
Os.12771.1.S1_at--31--1611Chr01:43153732..43153756 (25 bp)
AGCTGACTTGTGATCGAGCGGCTCT
LOC_Os01g73910
Os.12771.1.S1_at--228--1631Chr01:43153716..43153740 (25 bp)
AGCGGCTCTTCTTGTAGTGCAGGAC
LOC_Os01g73910
Os.12771.1.S1_at--456--7311Chr01:43153601..43153724 (25 bp)
GTGCAGGACCCCAAGGTTGTGATAT
LOC_Os01g73910
Os.12771.1.S1_at--705--4911Chr01:43153542..43153566 (25 bp)
GCTTGCGGACCAGCTGAACGTGGAC
LOC_Os01g73910
Os.12771.1.S1_at--96--4791Chr01:43153498..43153522 (25 bp)
GCTCCTACGACAAAGCTGCGTCAAA
LOC_Os01g73910
Os.12771.1.S1_at--659--1391Chr01:43153337..43153361 (25 bp)
AGACGAGAGAGCTGTCGCATCCTCT
LOC_Os01g73910
Os.12771.1.S1_at--623--611Chr01:43153305..43153329 (25 bp)
ATGCGAGCCCGCGAGATCGACGAGT
LOC_Os01g73910
Os.12771.1.S1_at--689--1511Chr01:43153250..43153274 (25 bp)
AGCAGAAGGTCATTCAGCTCCAGCT
LOC_Os01g73910
Os.12771.1.S1_at--559--1591Chr01:43153235..43153259 (25 bp)
AGCTCCAGCTCAATGATCACGATGC
LOC_Os01g73910
Os.12771.1.S1_at--491--3871Chr01:43153181..43153205 (25 bp)
CTGATCAACTCACTTCACTGTACAA
LOC_Os01g73910
Target Sequence 
AAGAGCAGCTCTACAGGTGGCTCCGGGCTGCAGAGCTGACTTGTGATCGAGCGGCTCTTCTTGTAGTGCAGGACCCCAAG
GTTGTGATATCTGTGCTGATGAAACTGGCCGGAGGGTGCCCGTCGCTTGCGGACCAGCTGAACGTGGACGCCTTCCTGGA
GCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGGTACATCCGGAACGCTCAGACGAGAGAGCTGTCGC
ATCCTCTGCCGGTGATGCGAGCCCGCGAGATCGACGAGTGGTCCAGGAGCCGAGAGTACAAGACGGTGCAGCAGAAGGTC
ATTCAGCTCCAGCTCAATGATCACGATGCAAGCTAGCTAAGCTGCAGGCTGGACCGGCCTGATCAACTCACTTCACTGTA
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis