Browse Element(s) Details


Os.12807.2.S1_x_at

Description gb:NM_196375.1
DB_XREF= gi:37534109
TID=Os.12807.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12807 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Glutelin II precursor (OSJNBa0050N08.16), mRNA.
PROD=Glutelin II precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2606011/11Glutelin type-A 2 precursor, putative, expressed
LOC_Os01g556904/11Glutelin type-A 1 precursor, putative, expressed
LOC_Os03g313602/11Glutelin type-A 3 precursor, putative, expressed
LOC_Os01g556301/11Glutelin type-A 3 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26020NANA10+13141522..13141989retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26050Os.26721.1.S1_at11/1110+13161357..13165343methionyl-tRNA synthetase, putative, expressed
LOC_Os10g26060Os.12807.1.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.12807.2.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.22346.2.S1_x_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060OsAffx.27508.71.S1_s_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070OsAffx.20368.1.S1_at11/1110+13170422..13172377pentatricopeptide, putative
LOC_Os10g26080Os.27435.1.S1_x_at7/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26080Os.46334.1.S1_x_at3/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12807.2.S1_x_at--555--6873Chr03:17820320..17820719 (25 bp)
GTTTGGATGAGACCTTTTGCACCAT
LOC_Os03g31360
Os.12807.2.S1_x_at--1124--7272Chr01:32404755..32404779 (25 bp)
GGGTAAGGCAAAACATCGATAATCC
LOC_Os01g55690
Os.12807.2.S1_x_at--1094--2072Chr01:32404767..32404791 (25 bp)
ACATCGATAATCCTAACCGTGCTGA
LOC_Os01g55690
Os.12807.2.S1_x_at--568--2612Chr01:32404781..32405247 (25 bp)
AACCGTGCTGATACATACAACCCAA
LOC_Os01g55690
Os.12807.2.S1_x_at--774--8831Chr10:13166744..13166768 (25 bp)
TGATACATACAACCCAAGAGCTGGA
LOC_Os10g26060
Os.12807.2.S1_x_at--603--1612Chr01:32404807..32404831 (25 bp)
AGCTGGAAGGGTTACAAATCTCAAC
LOC_Os01g55690
Os.12807.2.S1_x_at--199--7891Chr10:13166717..13166741 (25 bp)
GGTTACAAATCTCAACAGCCAGAAT
LOC_Os10g26060
Os.12807.2.S1_x_at--556--451Chr10:13166709..13166733 (25 bp)
ATCTCAACAGCCAGAATTTCCCCAT
LOC_Os10g26060
Os.12807.2.S1_x_at--833--10652Chr03:17820433..17820457 (25 bp)
TTCCCCATTCTTAATCTTGTACAGA
LOC_Os03g31360
Os.12807.2.S1_x_at--792--651Chr10:13166668..13166692 (25 bp)
ATGAGCGCCGTTAAAGTAAATCTAT
LOC_Os10g26060
Os.12807.2.S1_x_at--314--3971Chr10:13166455..13166479 (25 bp)
CGGTGTTCAACGGAGAGCTTCGTCG
LOC_Os10g26060
Target Sequence 
GTTTGGATGAGACCTTTTGCACCATNAGGGTAAGGCAAAACATCGATAATCCTAACCGTGCTGATACATACAACCCAAGA
GCTGGAAGGGTTACAAATCTCAACAGCCAGAATTTCCCCATTCTTAATCTTGTACAGATGAGCGCCGTTAAAGTAAATCT
ATACCAGAATGCACTCCTTTCACCGTTCTGGAACATCAACGCTCACAGCATCGTGTATATTACTCAAGGCCGAGCCCAGG
TTCAAGTTGTCANNNNACANNTGGAAAGACGGTGTTCAACGGAGAGCTTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12807.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis