Browse Element(s) Details


Os.12843.1.S1_at

Description gb:AK065305.1
DB_XREF= gi:32975323
TID=Os.12843.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002O02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002O02, full insert sequence.
FL= gb:AK065305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2202011/11Peroxidase 52 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21980Os.49477.1.S1_at11/113+12570504..12574469tRNA pseudouridine synthase family protein, expressed
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed
LOC_Os03g22020Os.12843.1.S1_at11/113+12596935..12598451Peroxidase 52 precursor, putative, expressed
LOC_Os03g22030OsAffx.25188.1.S1_at11/113+12602717..12604692hypothetical protein
LOC_Os03g22030OsAffx.20167.1.S1_x_at2/113+12602717..12604692hypothetical protein
LOC_Os03g22040Os.18531.1.S1_at11/113+12606123..12609182expressed protein
LOC_Os03g22050Os.8095.1.S4_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S3_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S2_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S1_at10/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22060Os.10800.1.S1_at1/113+12621916..12625575Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12843.1.S1_at--531--5951Chr03:12597222..12597246 (25 bp)
GAGACTTCGCCGAGTCCATGGTGAG
LOC_Os03g22020
Os.12843.1.S1_at--441--8891Chr03:12597201..12597225 (25 bp)
TGAGGATGGCCAGCCTGAGCCCGCT
LOC_Os03g22020
Os.12843.1.S1_at--1138--8191Chr03:12597141..12597165 (25 bp)
GGAAGGTGAACTACTACTAGCAAGA
LOC_Os03g22020
Os.12843.1.S1_at--793--10011Chr03:12597124..12597148 (25 bp)
TAGCAAGAACGCGAGATGGCCTAAA
LOC_Os03g22020
Os.12843.1.S1_at--517--6231Chr03:12597110..12597134 (25 bp)
GATGGCCTAAATTAAATGAGTTCCG
LOC_Os03g22020
Os.12843.1.S1_at--225--6711Chr03:12597091..12597115 (25 bp)
GTTCCGAATGAATTAATAGTGCTTA
LOC_Os03g22020
Os.12843.1.S1_at--748--4271Chr03:12597043..12597067 (25 bp)
CCTGTGGATGAGAGTTCTTCATTGT
LOC_Os03g22020
Os.12843.1.S1_at--126--10011Chr03:12597010..12597034 (25 bp)
TAGCTCATTTAATTCAGTTTGTGTG
LOC_Os03g22020
Os.12843.1.S1_at--429--5211Chr03:12596977..12597001 (25 bp)
GAATATTGTTTAAACGTTCTGGTGT
LOC_Os03g22020
Os.12843.1.S1_at--678--1891Chr03:12596964..12596988 (25 bp)
ACGTTCTGGTGTTCTTTGATTTTCA
LOC_Os03g22020
Os.12843.1.S1_at--82--3591Chr03:12596941..12596965 (25 bp)
CATTTCCTCTTGTAATAGTGATGAG
LOC_Os03g22020
Target Sequence 
GAGACTTCGCCGAGTCCATGGTGAGGATGGCCAGCCTGAGCCCGCTCGTCGGGAGCCAAGGCGAGGTCCGCGTCAACTGC
AGGAAGGTGAACTACTACTAGCAAGAACGCGAGATGGCCTAAATTAAATGAGTTCCGAATGAATTAATAGTGCTTAAGTA
TGTTAATTAATTACCTTCTCCTGTGGATGAGAGTTCTTCATTGTGGTTTAATTAGCTCATTTAATTCAGTTTGTGTGAGT
GAAGTGAATATTGTTTAAACGTTCTGGTGTTCTTTGATTTTCATTTCCTCTTGTAATAGTGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis