Browse Element(s) Details


Os.13002.1.S1_at

Description gb:AK111654.1
DB_XREF= gi:37988317
TID=Os.13002.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, partial cds, clone: 23C4BG006
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147N22, full insert sequence.
FL= gb:AK111941.1 gb:AK111654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4433011/11peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13002.1.S1_at--466--811Chr08:27764507..27764531 (25 bp)
ATGGGTCCCAATTCTTTATCACAAC
LOC_Os08g44330
Os.13002.1.S1_at--779--2551Chr08:27764529..27764553 (25 bp)
AACTGTGGCAACTCCATGGCTAGAC
LOC_Os08g44330
Os.13002.1.S1_at--459--51Chr08:27765622..27765646 (25 bp)
ATTGTACGCATGAGGTTCTTCCACC
LOC_Os08g44330
Os.13002.1.S1_at--1153--2031Chr08:27765679..27765703 (25 bp)
ACTTTATGTGCTGCTGTGGTGCATC
LOC_Os08g44330
Os.13002.1.S1_at--1007--8591Chr08:27765695..27765719 (25 bp)
TGGTGCATCGAGTTGGTCCTTCAAA
LOC_Os08g44330
Os.13002.1.S1_at--700--2611Chr08:27765724..27765748 (25 bp)
AACCCAGAGGCAGCACCATATTATT
LOC_Os08g44330
Os.13002.1.S1_at--144--5571Chr08:27765750..27765774 (25 bp)
GAAAGCACTGCCTTTGATGAGGTAT
LOC_Os08g44330
Os.13002.1.S1_at--835--6291Chr08:27765765..27765789 (25 bp)
GATGAGGTATGTGTTCCGAGTTTTA
LOC_Os08g44330
Os.13002.1.S1_at--6--5051Chr08:27765782..27765806 (25 bp)
GAGTTTTAACTAGCTTTCCCATCCA
LOC_Os08g44330
Os.13002.1.S1_at--312--7051Chr08:27765828..27765852 (25 bp)
GTAACATTTTTGCTGTACACGGGAT
LOC_Os08g44330
Os.13002.1.S1_at--776--6811Chr08:27765945..27765969 (25 bp)
GTTTTATTTTGACTAGCCACTGAAT
LOC_Os08g44330
Target Sequence 
ATGGGTCCCAATTCTTTATCACAACTGTGGCAACTCCATGGCTAGACAACAAACACACAGTGTTTGGTAGAGTTGTGAAA
GGGATGGATGTTGTTCAGCAAATCGAGAAGGTCAAGACCGACAAGAATGACAAACCATATCAGGATGTGAAGATCTTGAA
CGTTACAGTTCCAAAGACATAAGCTCAAACAATTGGTTTGACATTGTACGCATGAGGTTCTTCCACCCTTTGCAAGCCTG
TGAAAGACAAATGTTCTGAACTTTATGTGCTGCTGTGGTGCATCGAGTTGGTCCTTCAAACCTCAACCCAGAGGCAGCAC
CATATTATTAGAAAGCACTGCCTTTGATGAGGTATGTGTTCCGAGTTTTAACTAGCTTTCCCATCCATAACCCAAGGGCA
ATGGGACTGTAACATTTTTGCTGTACACGGGATTGGTATTGCAATTTAACAATGGAAAAAATGTAACGAGCCAGTTAGAT
GAGGATACATGGACGATTTTTCCATGCATGGGTGTAAGGGCGTAAGTTTTATTTTGACTAGCCACTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis