Browse Element(s) Details


Os.13003.1.S1_at

Description gb:AK068905.1
DB_XREF= gi:32978930
TID=Os.13003.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002G03, full insert sequence.
FL= gb:AK068905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4393011/11O-methyltransferase ZRP4, putative, expressed
LOC_Os05g439402/11O-methyltransferase ZRP4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43910Os.51231.1.S1_at11/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_x_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910Os.54620.1.A1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43920Os.50772.1.S1_at8/115+25472959..25478376Auxin response factor family protein, expressed
LOC_Os05g43930Os.13003.1.S1_at11/115+25481311..25483018O-methyltransferase ZRP4, putative, expressed
LOC_Os05g43940Os.48215.1.A1_at4/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43940Os.13003.1.S1_at2/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43950Os.27201.1.S1_at11/115+25492433..25496551expressed protein
LOC_Os05g43950Os.18072.1.S1_x_at1/115+25492433..25496551expressed protein
LOC_Os05g43960OsAffx.15096.1.S1_at11/115+25496926..25498559No apical meristem protein, expressed
LOC_Os05g43970Os.53554.1.S1_at11/115+25498862..25503369expressed protein
LOC_Os05g43980NANA5+25506325..25507085hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13003.1.S1_at--569--3512Chr05:25482085..25482109 (25 bp)
CATGTTTGAGAGTGTGCCACCGGCA
LOC_Os05g43930
Os.13003.1.S1_at--21--7472Chr05:25482096..25482120 (25 bp)
GTGTGCCACCGGCAGACGCTGTCTT
LOC_Os05g43930
Os.13003.1.S1_at--559--7551Chr05:25482497..25482521 (25 bp)
GGGCGATGACGATTGCATCAAGATA
LOC_Os05g43930
Os.13003.1.S1_at--770--2551Chr05:25482528..25482552 (25 bp)
AACTGCAAGAAAGCTATCCCTCCTA
LOC_Os05g43930
Os.13003.1.S1_at--1131--2691Chr05:25482538..25482562 (25 bp)
AAGCTATCCCTCCTAGAGACAAAGG
LOC_Os05g43930
Os.13003.1.S1_at--995--8591Chr05:25482589..25482613 (25 bp)
TGGTCGGAGCAGGACCGTCTGACCA
LOC_Os05g43930
Os.13003.1.S1_at--467--7031Chr05:25482725..25482749 (25 bp)
GTACAAGATTATGCCAGTCCTGGGT
LOC_Os05g43930
Os.13003.1.S1_at--869--4411Chr05:25482737..25482761 (25 bp)
GCCAGTCCTGGGTTTTAGGTCAATG
LOC_Os05g43930
Os.13003.1.S1_at--669--711Chr05:25482759..25482783 (25 bp)
ATGATCGAGGTGTACCCTTGAAGGT
LOC_Os05g43930
Os.13003.1.S1_at--497--4171Chr05:25482773..25482797 (25 bp)
CCCTTGAAGGTGACACCGGTGATTG
LOC_Os05g43930
Os.13003.1.S1_at--441--1851Chr05:25482993..25483016 (24 bp)
ACGACACGGGTGGACTATATTTATC
LOC_Os05g43930
Target Sequence 
CATGTTTGAGAGTGTGCCACCGGCAGACGCTGTCTTCCTCAAGTGGGTTCTACATGACTGGGGCGATGACGATTGCATCA
AGATATTAAAGAACTGCAAGAAAGCTATCCCTCCTAGAGACAAAGGAGGAAAGGTGATAATCATGGATATAGTGGTCGGA
GCAGGACCGTCTGACCAGAAGCACAGGGAGGTACAAGCGTTGTTCGATATGTACATCATGTTCGTCAATGGCATTGAAAG
AGATGAGCAAGAGTGGAAGAAGGTTTTTATGGGGGCTGGATTTAGTGGGTACAAGATTATGCCAGTCCTGGGTTTTAGGT
CAATGATCGAGGTGTACCCTTGAAGGTGACACCGGTGATTGTGATTGTGAAATCAATGATTGGTGATTAGTTGCTCGGTG
GAGATGTGGAGTGTAGCATGTTTGTTTGTTGTTGTGAGATTCACAATAGTGATGATTGTGTGGGTGTGTTTTCTTGGTTG
TATGTGAAATTGTGATTAGAATTCAGACCAATAATAAATTGTGATACTATGTTGTATCGATGTAAACTATAGGAAAACGA
CACGGGTGGACTATATTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis