Browse Element(s) Details


Os.13026.1.S1_at

Description gb:AB052943.1
DB_XREF= gi:14517621
GEN=Hd3a
TID=Os.13026.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hd3a (P0702F05.7), mRNA
DEF=Oryza sativa (indica cultivar-group) Hd3a mRNA, complete cds, cultivar:Kasalath.
FL= gb:AB052944.1 gb:AB052943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0632011/11FLOWERING LOCUS T protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06300Os.15230.1.S1_at11/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06300Os.49478.1.S1_at1/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06310OsAffx.27470.1.S1_at11/116+2928391..2930982hypothetical protein
LOC_Os06g06320Os.13026.1.S1_at11/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06320Os.15230.1.S1_at1/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06330Os.50507.1.S1_at11/116+2944576..2945332expressed protein
LOC_Os06g06340NANA6+2946712..2947192Protease inhibitor/seed storage/LTP family protein
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed
LOC_Os06g06360OsAffx.22585.1.S1_at11/116+2958755..2962007WRKY DNA binding domain containing protein, expressed
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13026.1.S1_at--723--3231Chr06:2939264..2939288 (25 bp)
CAAGACCGTGTCCAATGGCTGCGAG
LOC_Os06g06320
Os.13026.1.S1_at--291--711Chr06:2939343..2939365 (23 bp)
ATGAGGACATTCTACACCCTTGTGA
LOC_Os06g06320
Os.13026.1.S1_at--583--2151Chr06:2939356..2939542 (25 bp)
ACACCCTTGTGATGGTAGACCCAGA
LOC_Os06g06320
Os.13026.1.S1_at--150--6911Chr06:2939576..2939733 (25 bp)
GTATCTACATTGGTTGGTCACTGAT
LOC_Os06g06320
Os.13026.1.S1_at--406--3331Chr06:2939727..2939751 (25 bp)
CACTGATATTCCTGGTACTACTGCA
LOC_Os06g06320
Os.13026.1.S1_at--1137--9891Chr06:2939742..2939762 (21 bp)
TACTACTGCAGCGTCATTTGGGCAA
LOC_Os06g06320
Os.13026.1.S1_at--981--4131Chr06:2941168..2941192 (25 bp)
CGCCCGGGTGGCGTCAGAACTTCAA
LOC_Os06g06320
Os.13026.1.S1_at--1041--4831Chr06:2941298..2941322 (25 bp)
GCTAACGATGATCCCGATCGATCTG
LOC_Os06g06320
Os.13026.1.S1_at--712--6411Chr06:2941317..2941341 (25 bp)
GATCTGCTGCATGCTCACTATCATC
LOC_Os06g06320
Os.13026.1.S1_at--676--9211Chr06:2941343..2941367 (25 bp)
TCCAGCATGCTATACATTGCAGGTT
LOC_Os06g06320
Os.13026.1.S1_at--852--6571Chr06:2941382..2941406 (25 bp)
GATTCTCGACACACAACATATATAT
LOC_Os06g06320
Target Sequence 
CAAGACCGTGTCCAATGGCTGCGAGCTCAAGCCGTCCATGGTCACCCACCAGCCTAGGGTCGAGGTCGGCGGCAATGACA
TGAGGACATTCTACACCCTTGTGATGGTAGACCCAGATGCACCAAGCCCAAGTGACCCTAACCTTAGGGAGTATCTACAT
TGGTTGGTCACTGATATTCCTGGTACTACTGCAGCGTCATTTGGGCAAGAGGTGATGTGCTACGAGAGCCCAAGGCCAAC
CATGGGGATCCACCGGCTGGTGTTCGTGCTGTTCCAGCAGCTGGGGCGTCAGACAGTGTACGCGCCCGGGTGGCGTCAGA
ACTTCAACACCAAGGACTTCGCCGAGCTCTACAACCTCGGCTCGCCGGTCGCCGCCGTCTACTTCAACTGCCAGCGCGAG
GCNGGCTCCGGCGGCAGGAGGGTCTACNNCTAGCTAACGATGATCCCGATCGATCTGCTGCATGCTCACTATCATCATCC
AGCATGCTATACATTGCAGGTTCAGACAATTGAAATGATTCTCGACACACAACATATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis