Browse Element(s) Details


Os.5158.1.S1_at

Description gb:AK121981.1
DB_XREF= gi:37991604
TID=Os.5158.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108M22, full insert sequence.
FL= gb:AK121981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0637010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06320Os.13026.1.S1_at11/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06320Os.15230.1.S1_at1/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06330Os.50507.1.S1_at11/116+2944576..2945332expressed protein
LOC_Os06g06340NANA6+2946712..2947192Protease inhibitor/seed storage/LTP family protein
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed
LOC_Os06g06360OsAffx.22585.1.S1_at11/116+2958755..2962007WRKY DNA binding domain containing protein, expressed
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5158.1.S1_at--493--2791Chr06:2971823..2971847 (25 bp)
AAGATCAGGAAGTAGCCTCCCGATT
LOC_Os06g06370
Os.5158.1.S1_at--413--9991Chr06:2971835..2971859 (25 bp)
TAGCCTCCCGATTTTGATGTACAGC
LOC_Os06g06370
Os.5158.1.S1_at--941--6271Chr06:2971850..2971874 (25 bp)
GATGTACAGCTTGATACTGCCCAGA
LOC_Os06g06370
Os.5158.1.S1_at--394--9151Chr06:2971867..2971891 (25 bp)
TGCCCAGAGATTAACCTTCGCTATT
LOC_Os06g06370
Os.5158.1.S1_at--895--91Chr06:2971889..2971913 (25 bp)
ATTCCCTCGGGCAAAGATGTTAGCA
LOC_Os06g06370
Os.5158.1.S1_at--82--391Chr06:2971925..2971949 (25 bp)
ATCACATATACTCCCAACCATGTTA
LOC_Os06g06370
Os.5158.1.S1_at--1083--2631Chr06:2971940..2971964 (25 bp)
AACCATGTTAAACCTGGCTCATTGG
LOC_Os06g06370
Os.5158.1.S1_at--1027--3751Chr06:2971957..2971981 (25 bp)
CTCATTGGTAGGGTGGTGGCTTTTA
LOC_Os06g06370
Os.5158.1.S1_at--216--4891Chr06:2971975..2971999 (25 bp)
GCTTTTACCCGATGTGATCAGTCAA
LOC_Os06g06370
Os.5158.1.S1_at--575--931Chr06:2972012..2972036 (25 bp)
AGGCACTTGTCTATTCGTATGTACA
LOC_Os06g06370
Os.5158.1.S1_at--1111--10271Chr06:2972300..2972324 (25 bp)
TTTGCATCGGATGTACTGTAAGCCA
NONE
Target Sequence 
AAGATCAGGAAGTAGCCTCCCGATTTTGATGTACAGCTTGATACTGCCCAGAGATTAACCTTCGCTATTCCCTCGGGCAA
AGATGTTAGCATGCACAGAATCATCACATATACTCCCAACCATGTTAAACCTGGCTCATTGGTAGGGTGGTGGCTTTTAC
CCGATGTGATCAGTCAATCGACAAATTTTAGGCACTTGTCTATTCGTATGTACATTTGCCTTCTTGACCTTAGGTTGAAT
TCTCTCAAGGTGTTGGTAGTTGACAAATTGCCTCAGATGAGCAATGAAACAATTGACTGTTTTGCTAGAAAAAGAGAGAA
ATNCAAGATGTCNCTATGTCAGTNTCAACTAACAGGCATGCCCAGATGAGGTGAGCNCGACNCAAAGATGTCAGTCTTTA
ACTNTTAACAGGCAGTNTCAACTTAGAAACGCTGCAGGAGATAACGGGAATGTATAAATATTTTCTCTATACTGCTATTT
GCATCGGATGTACTGTAAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis