Browse Element(s) Details


Os.33206.1.S1_at

Description gb:AK101378.1
DB_XREF= gi:32986587
TID=Os.33206.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CGI-35 protein (P0702F05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036C08, full insert sequence.
FL= gb:AK101378.1 gb:AK059986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0641010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06430Os.34705.1.S1_at11/116+2998149..2999425expressed protein
LOC_Os06g06440Os.27427.1.S1_at11/116+3000111..3008251multidrug-resistance associated protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33206.1.S1_at--599--3011NONE
AATGCACACCATGTATCACGGATTG
NONE
Os.33206.1.S1_at--338--5191Chr06:2992380..2992404 (25 bp)
GAATTGCAAAGGACCCTAGGTTCCA
LOC_Os06g06410
Os.33206.1.S1_at--1006--7891Chr06:2992362..2992386 (25 bp)
GGTTCCAGAGATTAGCATGCACACA
LOC_Os06g06410
Os.33206.1.S1_at--37--7631Chr06:2992334..2992358 (25 bp)
GGGAACTTATGCTGATGACTGTATC
LOC_Os06g06410
Os.33206.1.S1_at--849--2851Chr06:2991632..2991656 (25 bp)
AAGTGCTACATCGTCGCAACATGTG
LOC_Os06g06410
Os.33206.1.S1_at--350--7911Chr06:2991496..2991520 (25 bp)
GGTTCCTGGTGTTCCAATCATGTAT
LOC_Os06g06410
Os.33206.1.S1_at--1--251Chr06:2991473..2991497 (25 bp)
ATATCACTCGGCACAGGTACTCGAT
LOC_Os06g06410
Os.33206.1.S1_at--250--6491Chr06:2991451..2991475 (25 bp)
GATAGAACGACTCCCTGAAGCTACA
LOC_Os06g06410
Os.33206.1.S1_at--1116--5071Chr06:2991318..2991342 (25 bp)
GCACCAAGAATCTGATCGGCACGGA
LOC_Os06g06410
Os.33206.1.S1_at--194--10331Chr06:2991275..2991299 (25 bp)
TTTCACTGTTCAACTTGCTGGCCAA
LOC_Os06g06410
Os.33206.1.S1_at--754--9131Chr06:2991260..2991284 (25 bp)
TGCTGGCCAAGAATACTGCTGTAGT
LOC_Os06g06410
Target Sequence 
AATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATT
GCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTAC
TCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCA
TGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCA
CGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis