Browse Element(s) Details


Os.34705.1.S1_at

Description gb:AK070453.1
DB_XREF= gi:32980477
TID=Os.34705.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protien~similar to Arabidopsis thaliana chromosome 4, At4g01140 (P0702F05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048N12, full insert sequence.
FL= gb:AK070453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0643011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06430Os.34705.1.S1_at11/116+2998149..2999425expressed protein
LOC_Os06g06440Os.27427.1.S1_at11/116+3000111..3008251multidrug-resistance associated protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34705.1.S1_at--251--8411Chr06:2998866..2998890 (25 bp)
GGCCCGTCGTGCGTGGTGTCCGGCA
LOC_Os06g06430
Os.34705.1.S1_at--324--3931Chr06:2999020..2999044 (25 bp)
CGGCGAGCTTCCTGGCGGTCACCGT
LOC_Os06g06430
Os.34705.1.S1_at--320--1111Chr06:2999182..2999206 (25 bp)
AGTTGGTGGAGGAGCTAAGCTAACC
LOC_Os06g06430
Os.34705.1.S1_at--21--6191Chr06:2999190..2999214 (25 bp)
GAGGAGCTAAGCTAACCTCCGCCGC
LOC_Os06g06430
Os.34705.1.S1_at--1034--4511Chr06:2999229..2999253 (25 bp)
GCGAGCCGCCGTAGTTTTCGTAAGG
LOC_Os06g06430
Os.34705.1.S1_at--841--9531Chr06:2999292..2999316 (25 bp)
TCTTTTCAGATTATTACGAGACAAA
LOC_Os06g06430
Os.34705.1.S1_at--1097--131Chr06:2999304..2999328 (25 bp)
ATTACGAGACAAATGTACAGTACAT
LOC_Os06g06430
Os.34705.1.S1_at--70--7031Chr06:2999318..2999342 (25 bp)
GTACAGTACATTAAACTCTTTCAAA
LOC_Os06g06430
Os.34705.1.S1_at--1159--3331Chr06:2999351..2999375 (25 bp)
CACGTGCAACTCAAACTCAAATTCA
LOC_Os06g06430
Os.34705.1.S1_at--775--8191Chr06:2999385..2999409 (25 bp)
GGAATGTACATTGCAGTTGGGTTAT
LOC_Os06g06430
Os.34705.1.S1_at--100--3611Chr06:2999393..2999417 (25 bp)
CATTGCAGTTGGGTTATGTTAAATT
LOC_Os06g06430
Target Sequence 
GGCCCGTCGTGCGTGGTGTCCGGCACGGCCACGGGGCACTACGGGGTGGCGGTGCGCGTGGAGACGCCGCCACCACCGCC
ACCGCCACGACCACCGCCGGTGAGGGAGCGGTGGTGGGTGTGGAAGGTCGGGGCCACCGCCGGCGGGGTGGCGGCGGCGA
GCTTCCTGGCGGTCACCGTGGTCGGCGCCGTGAGGTGGAGGAGGAGGCGGCGGAGGGAGGAGATGGAGCGGCGCGCGATG
TGCGGGGAGGAGCTCGGGAGGATGGCGGTGAGGGGGAGCAGGATGCCGTCGGCGAAGATGGTGAGGACGCGGCCGGAGTT
GGTGGAGGAGCTAAGCTAACCTCCGCCGCCGTGAGTTGCACCGGCGAGCCGCCGTAGTTTTCGTAAGGTTTTTTTTTTCT
CCTTTCGTTTTTTAGGTGTAATTTTTTCTTTTCAGATTATTACGAGACAAATGTACAGTACATTAAACTCTTTCAAAAAA
AAATTCACGTGCAACTCAAACTCAAATTCAAATTGGATTGGAATGTACATTGCAGTTGGGTTATGTTAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis