Browse Element(s) Details


Os.27427.1.S1_at

Description gb:CB677870
DB_XREF= gi:29681595
DB_XREF=OSJNEe15E15.r
CLONE=OSJNEe15E15
TID=Os.27427.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) canalicular multispecific organic anion transporter 2-like proein (P0702F05.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0644011/11multidrug-resistance associated protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06430Os.34705.1.S1_at11/116+2998149..2999425expressed protein
LOC_Os06g06440Os.27427.1.S1_at11/116+3000111..3008251multidrug-resistance associated protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27427.1.S1_at--962--8111Chr06:3000925..3000949 (25 bp)
GGACTGCACAATGGTCCTTGCAATG
LOC_Os06g06440
Os.27427.1.S1_at--664--1851Chr06:3000554..3000578 (25 bp)
ACGAAGCTCATGGAAACAGAAGGTT
LOC_Os06g06440
Os.27427.1.S1_at--607--1851Chr06:3000539..3000563 (25 bp)
ACAGAAGGTTCTCTTTTCCGAGAGC
LOC_Os06g06440
Os.27427.1.S1_at--557--9511Chr06:3000528..3000552 (25 bp)
TCTTTTCCGAGAGCTCGTCAAGGAG
LOC_Os06g06440
Os.27427.1.S1_at--624--3132Chr06:3000467..3000491 (25 bp)
AATTTTCACATGCTTTCAGTTTCTG
LOC_Os06g06440
Os.27427.1.S1_at--486--5591Chr06:3000425..3000449 (25 bp)
GAAATCTGTATTCATGCTCATAGAA
LOC_Os06g06440
Os.27427.1.S1_at--52--1211Chr06:3000385..3000409 (25 bp)
AGTTTGATGAGATGATAGTGCCACA
LOC_Os06g06440
Os.27427.1.S1_at--89--2451Chr06:3000360..3000384 (25 bp)
AAAATGCACATTTTCGCCATCTGTC
LOC_Os06g06440
Os.27427.1.S1_at--619--4171Chr06:3000346..3000370 (25 bp)
CGCCATCTGTCATTAGCCGAAATTT
LOC_Os06g06440
Os.27427.1.S1_at--572--2511Chr06:3000242..3000266 (25 bp)
AACATTTCCTTGCTGAAATAGTCAA
LOC_Os06g06440
Os.27427.1.S1_at--654--371Chr06:3000189..3000213 (25 bp)
ATCAAGTTTGTAAATCATGCTAGTA
LOC_Os06g06440
Target Sequence 
GGACTGCACAATGGTCCTTGCAATGAGCGATNNNAAAGTGGTGGAGTATGACAAACCTACGAAGCTCATGGAAACAGAAG
GTTCTCTTTTCCGAGAGCTCGTCAAGGAGTACTGGTCATACGCATCGAGTGGAAATGTTTAGGTGAATTTTCACATGCTT
TCAGTTTCTGAAGAGTTAACAGAGGCAGAAATCTGTATTCATGCTCATAGAAGAGTTGGTATGTTGGAGTTTGATGAGAT
GATAGTGCCACAAAAATGCACATTTTCGCCATCTGTCATTAGCCGAAATTTGAGCAATATGTGGTGCTGGTGCAGGCGTG
CAGCTTCTGTCCATGGGTGTTCTGCAAATGCTTAACAGAGTAAATTCATAAACATTTCCTTGCTGAAATAGTCAAGATTT
TCGAAAGGTTATATGAGATGATCATCAAGTTTGTAAATCATGCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis