Browse Element(s) Details


OsAffx.22584.1.S1_at

Description tigr:9634.m00567
TID=OsAffx.22584.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0639011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed
LOC_Os06g06360OsAffx.22585.1.S1_at11/116+2958755..2962007WRKY DNA binding domain containing protein, expressed
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06430Os.34705.1.S1_at11/116+2998149..2999425expressed protein
LOC_Os06g06440Os.27427.1.S1_at11/116+3000111..3008251multidrug-resistance associated protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22584.1.S1_at--854--10131Chr06:2980003..2980027 (25 bp)
TATGCTGAGTGGCTCTGTGCGATCA
LOC_Os06g06390
OsAffx.22584.1.S1_at--864--5531Chr06:2979950..2979974 (25 bp)
GAAACATCTCTATCTCATCACTGGA
LOC_Os06g06390
OsAffx.22584.1.S1_at--169--6031Chr06:2979927..2979951 (25 bp)
GAGATGCTTTCTTCCTTAGTGTCAC
LOC_Os06g06390
OsAffx.22584.1.S1_at--711--171Chr06:2979897..2979921 (25 bp)
ATTTTCATCACTAGCTTCAGCCTGA
LOC_Os06g06390
OsAffx.22584.1.S1_at--757--4271Chr06:2979852..2979876 (25 bp)
CCTCCTTGGGTAGCATCACTTAGAA
LOC_Os06g06390
OsAffx.22584.1.S1_at--19--2551Chr06:2979797..2979821 (25 bp)
AACTCCGTGCTGATGCCATACATGT
LOC_Os06g06390
OsAffx.22584.1.S1_at--273--331Chr06:2979780..2979804 (25 bp)
ATACATGTCCTTGGAGGCCTGCAAA
LOC_Os06g06390
OsAffx.22584.1.S1_at--328--2451Chr06:2979758..2979782 (25 bp)
AAAATCTGCTCTGCCTGAAACTCTA
LOC_Os06g06390
OsAffx.22584.1.S1_at--994--251Chr06:2979724..2979748 (25 bp)
ATATGCTGATGATCGCCTCGTTTTT
LOC_Os06g06390
OsAffx.22584.1.S1_at--397--6531Chr06:2979689..2979713 (25 bp)
GATTTGCCAGGGTCAAGCTTCTGAT
LOC_Os06g06390
OsAffx.22584.1.S1_at--586--2911Chr06:2979570..2979594 (25 bp)
AAGGATGGCATCTCAGGTCTGAACA
LOC_Os06g06390
Target Sequence 
TATGCTGAGTGGCTCTGTGCGATCACTCTCCATTGACATCTTCGACGCACAAGGAAACATCTCTATCTCATCACTGGAGA
TGCTTTCTTCCTTAGTGTCACCTCCCATTTTCATCACTAGCTTCAGCCTGACTGGCAAGCTTGGTAGTCTACCTCCTTGG
GTAGCATCACTTAGAAGCGTCTCGAGGCTTACTCTTCGCAGGAGCCAACTCCGTGCTGATGCCATACATGTCCTTGGAGG
CCTGCAAAATCTGCTCTGCCTGAAACTCTATCACAAATCATATGCTGATGATCGCCTCGTTTTTCCACAGGGAGGATTTG
CCAGGGTCAAGCTTCTGATCGATGATAACCTGGTGAACCTTGAAAAGTTGCATTTCAATGAGGGATCGATGCCTAATCTT
GAGAGGCTGACATTGTCATTCCTGAGAGAACCCAAGGATGGCATCTCAGGTCTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis