Browse Element(s) Details


Os.51669.1.S1_at

Description gb:AK063337.1
DB_XREF= gi:32973355
TID=Os.51669.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A08, full insert sequence.
FL= gb:AK063337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g063507/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06300Os.15230.1.S1_at11/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06300Os.49478.1.S1_at1/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06310OsAffx.27470.1.S1_at11/116+2928391..2930982hypothetical protein
LOC_Os06g06320Os.13026.1.S1_at11/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06320Os.15230.1.S1_at1/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06330Os.50507.1.S1_at11/116+2944576..2945332expressed protein
LOC_Os06g06340NANA6+2946712..2947192Protease inhibitor/seed storage/LTP family protein
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed
LOC_Os06g06360OsAffx.22585.1.S1_at11/116+2958755..2962007WRKY DNA binding domain containing protein, expressed
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0010143biological_processcutin biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51669.1.S1_at--540--11Chr06:2956081..2956105 (25 bp)
ATAGTTTTGAATCTTTCCTTGTTGC
LOC_Os06g06350
Os.51669.1.S1_at--818--10671Chr06:2956095..2956119 (25 bp)
TTCCTTGTTGCTGTCATAAATCCCA
LOC_Os06g06350
Os.51669.1.S1_at--736--1371Chr06:2956361..2956385 (25 bp)
AGAGCTGTACATCTTGACCCATTAC
LOC_Os06g06350
Os.51669.1.S1_at--40--8091Chr06:2956396..2956420 (25 bp)
GGAGCGTGATCTTATAACCCCAACA
LOC_Os06g06350
Os.51669.1.S1_at--86--5551Chr06:2956429..2956453 (25 bp)
GAAACGACCACAGTTGCTTAAGCAC
LOC_Os06g06350
Os.51669.1.S1_at--455--4891Chr06:2956444..2956603 (25 bp)
GCTTAAGCACTATCAGGGAACCATT
LOC_Os06g06350
Os.51669.1.S1_at--1055--7611Chr06:2956594..2956618 (25 bp)
GGGAACCATTGACGCACTCTACAAG
LOC_Os06g06350
Os.51669.1.S1_at--14--1431Chr06:2956655..2956679 (25 bp)
AGAAAGGCTTCACCCATTCATGTAA
NONE
Os.51669.1.S1_at--588--2111Chr06:2956714..2956738 (25 bp)
ACATGTCATGTACCTAACCACTCAT
NONE
Os.51669.1.S1_at--1142--1271Chr06:2956753..2956777 (25 bp)
AGATCATAGCCTTGTCTTTCTTGTG
NONE
Os.51669.1.S1_at--512--2131Chr06:2956807..2956831 (25 bp)
ACAGGGACTGTCTTTTGTTAGATCA
NONE
Target Sequence 
ATAGTTTTGAATCTTTCCTTGTTGCTGTCATAAATCCCAACCAACAAGTTCTTGAGCATTGGGCTGAACAAAATGGTATC
TCTGGAAGTTTATCTGAATTATGTGAAAATTCAAGAGCTAAAGAATATATTCTTTCAGAACTCACGAAGATTGCAAAGGA
AAAGAAGCTGAAAGGCTATGAGTTCATAAGAGCTGTACATCTTGACCCATTACCATTTGATATGGAGCGTGATCTTATAA
CCCCAACATACAAGAAGAAACGACCACAGTTGCTTAAGCACTATCAGGGAACCATTGACGCACTCTACAAGATGGCAAAG
TAAACGAGCAATGCTACAGACAATTGAAGAAAGGCTTCACCCATTCATGTAATCTCACCATGTTGGTATATATATAAATC
CAATTCACATGTCATGTACCTAACCACTCATAAAAGACTGGAAACAGATCATAGCCTTGTCTTTCTTGTGCTGAAATGAT
TACTGTCAGAAACGGTGTGACAGGGACTGTCTTTTGTTAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis