Browse Element(s) Details


Os.15230.1.S1_at

Description gb:AB062676.1
DB_XREF= gi:17221651
GEN=RFT1
TID=Os.15230.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15230 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RFT1 mRNA for FT-like protein, complete cds.
PROD=FT-like protein
FL= gb:AB062676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0630011/11TWIN SISTER of FT protein, putative, expressed
LOC_Os06g063201/11FLOWERING LOCUS T protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06300Os.15230.1.S1_at11/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06300Os.49478.1.S1_at1/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06310OsAffx.27470.1.S1_at11/116+2928391..2930982hypothetical protein
LOC_Os06g06320Os.13026.1.S1_at11/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06320Os.15230.1.S1_at1/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06330Os.50507.1.S1_at11/116+2944576..2945332expressed protein
LOC_Os06g06340NANA6+2946712..2947192Protease inhibitor/seed storage/LTP family protein
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15230.1.S1_at--609--3451Chr06:2926095..2926119 (25 bp)
CAGGGACGATCCTCTTGTGGTTGGC
LOC_Os06g06300
Os.15230.1.S1_at--488--6271Chr06:2926132..2926156 (25 bp)
GATGTGCTGGATCCATTCGTCCGGA
LOC_Os06g06300
Os.15230.1.S1_at--887--11Chr06:2926146..2926170 (25 bp)
ATTCGTCCGGATCACTAACCTCAGT
LOC_Os06g06300
Os.15230.1.S1_at--885--2631Chr06:2926162..2926186 (25 bp)
AACCTCAGTGTCAGCTATGGTGCAA
LOC_Os06g06300
Os.15230.1.S1_at--342--7351Chr06:2926181..2926205 (25 bp)
GTGCAAGGATCGTCTCCAATGGCTG
LOC_Os06g06300
Os.15230.1.S1_at--912--691Chr06:2926264..2926286 (23 bp)
ATGAGGACGTTCTACACACTCGTGA
LOC_Os06g06300
Os.15230.1.S1_at--740--2191Chr06:2926277..2926448 (25 bp)
ACACACTCGTGATGGTAGACCCGGA
LOC_Os06g06300
Os.15230.1.S1_at--951--6511Chr06:2926617..2926641 (25 bp)
GATATTCCTGGTACCACTGGAGCAA
LOC_Os06g06300
Os.15230.1.S1_at--682--1431Chr06:2927288..2927312 (25 bp)
AGAACTTCAGCACCAGGAACTTCGC
LOC_Os06g06300
Os.15230.1.S1_at--244--8272Chr06:2927383..2927407 (25 bp)
GGCAGGAGGGTCTACCCCTAGCTAG
LOC_Os06g06300
Os.15230.1.S1_at--472--2691Chr06:2927451..2927475 (25 bp)
AAGCTGAGACCTGCCTAGCTGTATA
LOC_Os06g06300
Target Sequence 
CAGGGACGATCCTCTTGTGGTTGGCAGGATTGTGGGTGATGTGCTGGATCCATTCGTCCGGATCACTAACCTCAGTGTCA
GCTATGGTGCAAGGATCGTCTCCAATGGCTGCGAGCTCAAGCCGTCCATGGTGACCCAACAGCCCAGGGTCGTGGTCGGT
GGCAATGACATGAGGACGTTCTACACACTCGTGATGGTAGACCCGGATGCTCCGAGCCCAAGCAACCCTAACCTTAGGGA
GTATCTACACTGGCTGGTCACCGATATTCCTGGTACCACTGGAGCAACATTTGGGCAAGAGGTGATGTGCTACGAGAGCC
CAAGGCCAACCATGGGGATCCACCGGCTGGTGTTCGTGCTGTTCCAGCAGCTGGGGCGTCAGACGGTGTACGCACCGGGG
TGGCGCCAGAACTTCAGCACCAGGAACTTCGCCGAGCTCTACAACCTCGGCTCGCCGGTCGCCACCGTCTACTTCAACTG
CCAGCGCGAGGCCGGCTCCGGCGGCAGGAGGGTCTACCCCTAGCTAGCTACGCATGCCACCCGGCCTCCATGCATGCAGC
AGCTATAGCTAAGCTGAGACCTGCCTAGCTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis