Browse Element(s) Details


Os.32701.1.S1_at

Description gb:AK103202.1
DB_XREF= gi:32988411
TID=Os.32701.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0702F05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122C11, full insert sequence.
FL= gb:AK103202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0642011/11lactoylglutathione lyase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06430Os.34705.1.S1_at11/116+2998149..2999425expressed protein
LOC_Os06g06440Os.27427.1.S1_at11/116+3000111..3008251multidrug-resistance associated protein 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32701.1.S1_at--535--7091Chr06:2994937..2994961 (25 bp)
GTCAACGTCTGCACGCTGCGATGGG
LOC_Os06g06420
Os.32701.1.S1_at--337--6351Chr06:2996555..2996579 (25 bp)
GATGCTGTCATTCACTGTACCAGAC
LOC_Os06g06420
Os.32701.1.S1_at--683--1851Chr06:2996595..2996619 (25 bp)
ACGAAATTATTGTCGCTGGGAGCTG
LOC_Os06g06420
Os.32701.1.S1_at--732--5891Chr06:2996614..2996638 (25 bp)
GAGCTGAGTTGGATGGGCCCATCAA
LOC_Os06g06420
Os.32701.1.S1_at--364--7571Chr06:2996628..2996652 (25 bp)
GGGCCCATCAAATATGAGATCCATG
LOC_Os06g06420
Os.32701.1.S1_at--479--571Chr06:2996646..2996758 (25 bp)
ATCCATGGAAAGGTTGCAGCCGTAC
LOC_Os06g06420
Os.32701.1.S1_at--111--5371Chr06:2996801..2996825 (25 bp)
GAAGAACCTACACTGCAATGTACAT
LOC_Os06g06420
Os.32701.1.S1_at--1012--7851Chr06:2996857..2996881 (25 bp)
GGTATGTTTTATTTCTGTGGACTGA
LOC_Os06g06420
Os.32701.1.S1_at--753--10751Chr06:2996890..2996914 (25 bp)
TTGACAGAAGCAACTGACTGGGCCT
LOC_Os06g06420
Os.32701.1.S1_at--840--5731Chr06:2996905..2996929 (25 bp)
GACTGGGCCTGTAGTGTCTGAAACA
LOC_Os06g06420
Os.32701.1.S1_at--639--10031Chr06:2996942..2996966 (25 bp)
TAGATGGGCATCTCTTTCTGTTAAG
LOC_Os06g06420
Target Sequence 
GTCAACGTCTGCACGCTGCGATGGGCGGAGCTCCAGTCCGGGCCGCTCAAGCTCGCCCTCATGCACACCAACGACAGTNN
TCNNNNNNNNNNGNGNNNNNNTTNNTCGATGCTGTCATTCACTGTACCAGACATAAACAGTACAGTTACGAAATTATTGT
CGCTGGGAGCTGAGTTGGATGGGCCCATCAAATATGAGATCCATGGAAAGGTTGCAGCCGTACGATGCATCGATGGGCAC
ATGCTTGGCCTTTTCGAACCAGCGTGAAGAACCTACACTGCAATGTACATAATGAAAAAATTATTTCAATTTCTTGCAGA
TGGTATGTTTTATTTCTGTGGACTGAAGTTGTTGTTGACAGAAGCAACTGACTGGGCCTGTAGTGTCTGAAACACTGATG
AATAGTTAGATGGGCATCTCTTTCTGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis