Browse Element(s) Details


Os.1305.1.S1_at

Description gb:AK120469.1
DB_XREF= gi:37990092
TID=Os.1305.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A05.29 (P0489A05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109F03, full insert sequence.
FL= gb:AK120469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1064011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_x_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10670OsAffx.23190.3.S1_s_at11/111+5692075..5692386hypothetical protein
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1305.1.S1_at--473--1251Chr01:5682607..5682631 (25 bp)
AGATTGTTCAGGAGGCCGTGACGAT
LOC_Os01g10640
Os.1305.1.S1_at--320--3471Chr01:5682673..5682697 (25 bp)
CAGGAAGAAGAAGCACGGCGTCGTC
LOC_Os01g10640
Os.1305.1.S1_at--517--6171Chr01:5682728..5682752 (25 bp)
GAGGAGACCACCTCTGCCGCTGTCG
LOC_Os01g10640
Os.1305.1.S1_at--143--1511Chr01:5682780..5682804 (25 bp)
AGCAGCAGGATGCTCGGGTCGGTGC
LOC_Os01g10640
Os.1305.1.S1_at--640--8371Chr01:5682813..5682837 (25 bp)
GGCGTTGGCCACTAGCGGGACGACG
LOC_Os01g10640
Os.1305.1.S1_at--724--8111Chr01:5682830..5682854 (25 bp)
GGACGACGCCGGCTGATCTATAGTT
LOC_Os01g10640
Os.1305.1.S1_at--469--5811Chr01:5682834..5682858 (25 bp)
GACGCCGGCTGATCTATAGTTAGTT
LOC_Os01g10640
Os.1305.1.S1_at--389--3451Chr01:5682863..5682887 (25 bp)
CAGTAGATTCAGAGTGTCCCTTTTT
LOC_Os01g10640
Os.1305.1.S1_at--549--231Chr01:5683057..5683081 (25 bp)
ATATATCTTGTGAAACTCTAAAGGT
LOC_Os01g10640
Os.1305.1.S1_at--805--5591Chr01:5683084..5683108 (25 bp)
GAAATTCGCAAGATTTTATCTCAAT
LOC_Os01g10640
Os.1305.1.S1_at--1048--2111Chr01:5683120..5683144 (25 bp)
ACATGGTTTAGCAATTACGATATAT
LOC_Os01g10640
Target Sequence 
AGATTGTTCAGGAGGCCGTGACGATGATGATGGGATCCTCTGCCGGCGCCGCCGNCGCCGCCGTCGCAGGAAGAAGAAGC
ACGGCGTCGTCCTCGCCGCCGGAGGAGGAGATGCTGCTNCCGAGGAGACCACCTCTGCCGCTGTCGCCGCCGGCGGNGAC
CACCGGAGCTCGCAGCAGCAGGATGCTCGGGTCGGTGCCCAGCCCCGGCGTTGGCCACTAGCGGGACGACGCCGGCTGAT
CTATAGTTAGTTAATACAGTAGATTCAGAGTGTCCCTTTTTTTTATACATATTTGACTTTCTTTAAAATATTTATGTAAA
TATTATTTTTTAGTTGTTTTATAAAATATAGTTTAAGTATGATGTATTTGTAGGAAAAAGTTAAATAGGAGGAATGATCA
AACATGTGTTTAAAGACGTTATTTATTTAAAAAAGAGAGGGAGTATATATATATATCTTGTGAAACTCTAAAGGTTAGAA
ATTCGCAAGATTTTATCTCAATTTTTCAATTGAACATGGTTTAGCAATTACGATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis