Browse Element(s) Details


Os.1307.1.S1_a_at

Description gb:AK063900.1
DB_XREF= gi:32973918
TID=Os.1307.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1307 (NCBI UniGene Cluster)
UG_TITLE=MRNA for putative phytosulfokine peptide precursor (psk2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-H04, full insert sequence.
FL= gb:AK063900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0519011/11Phytosulfokines 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05190Os.1307.1.S1_a_at11/1111+2287185..2288453Phytosulfokines 2 precursor, putative, expressed
LOC_Os11g05200OsAffx.30824.1.S1_at11/1111+2293555..2294286Zinc finger, C3HC4 type family protein
LOC_Os11g05210OsAffx.24267.1.S1_at1/1111+2295691..2302619retrotransposon protein, putative, unclassified
LOC_Os11g05220Os.14919.1.S1_at5/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220OsAffx.29313.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220Os.56216.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1307.1.S1_a_at--681--3971Chr11:2287547..2287571 (25 bp)
CGGTGTCAAGGCAGTAGCAGCAGTT
LOC_Os11g05190
Os.1307.1.S1_a_at--225--8851Chr11:2287577..2287601 (25 bp)
TGATCAGCTTGTGCTCCAGCTGGAA
LOC_Os11g05190
Os.1307.1.S1_a_at--1125--4771Chr11:2287589..2287613 (25 bp)
GCTCCAGCTGGAAGGTGACACCGGC
LOC_Os11g05190
Os.1307.1.S1_a_at--450--571Chr11:2287909..2287933 (25 bp)
ATCCATCCAACTACACGCTGAAATC
LOC_Os11g05190
Os.1307.1.S1_a_at--1118--431Chr11:2288002..2288026 (25 bp)
ATCTACCTCTGCATGCTGTTTTCAC
LOC_Os11g05190
Os.1307.1.S1_a_at--87--8791Chr11:2288018..2288042 (25 bp)
TGTTTTCACTGCATCGATCGCTACT
LOC_Os11g05190
Os.1307.1.S1_a_at--309--6391Chr11:2288033..2288057 (25 bp)
GATCGCTACTGTTCTGCAGTGCCAA
LOC_Os11g05190
Os.1307.1.S1_a_at--1160--3071Chr11:2288056..2288080 (25 bp)
AATCACTGTCCGTTTCTGTACAATC
LOC_Os11g05190
Os.1307.1.S1_a_at--760--7031Chr11:2288073..2288097 (25 bp)
GTACAATCTGTGATACTACTAGCTA
LOC_Os11g05190
Os.1307.1.S1_a_at--307--4871Chr11:2288094..2288118 (25 bp)
GCTAGTAGCAGTACATGGCATCGTT
LOC_Os11g05190
Os.1307.1.S1_a_at--479--8491Chr11:2288109..2288133 (25 bp)
TGGCATCGTTTTCCTTCAAGTGTTC
LOC_Os11g05190
Target Sequence 
CGGTGTCAAGGCAGTAGCAGCAGTTGCAGCTGATCAGCTTGTGCTCCAGCTGGAAGGTGACACCGGCAATGGCGACGAGG
TCTCCGAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCAGCATGCGAGGAGGGGAAGAACAACGACGAGTGCGTGCAGAGG
AGGCTGCTCAGCGACGCCCACCTCGACTACATCTACACGCAGCACAAGAACAAGCCTTGATCGATCGATCCATCCATCCA
ACTACACGCTGAAATCCAAAGCTAATACAAGGAAGATCGAGATCGAGATAAATTAACCAACTCTATATGCATATCTATCT
ATCCATCTACCTCTGCATGCTGTTTTCACTGCATCGATCGCTACTGTTCTGCAGTGCCAATCACTGTCCGTTTCTGTACA
ATCTGTGATACTACTAGCTAGTAGCAGTACATGGCATCGTTTTCCTTCAAGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1307.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis