Browse Element(s) Details


Os.13102.1.S2_at

Description gb:AK120009.1
DB_XREF= gi:37989632
TID=Os.13102.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU057376(S21389)~similar to Arabidopsis thaliana chromosome 5, F8F6.250~unknown protein (P0460E08.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-A09, full insert sequence.
FL= gb:AK120009.1 gb:AK120818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g556505/11patatin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed
LOC_Os01g55620OsAffx.13041.1.S1_x_at8/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_x_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.1.S1_at3/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620Os.28110.1.S1_x_at1/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55630OsAffx.11615.1.S1_at11/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.8013.1.S1_at3/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.22346.1.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630OsAffx.27508.71.S1_s_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.12807.2.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55640NANA1+32384003..32384981Seven in absentia protein family protein
LOC_Os01g55650Os.13102.1.S1_at11/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55650Os.13102.1.S2_at5/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein
LOC_Os01g55690Os.22346.1.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690OsAffx.27508.71.S1_s_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.22346.2.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.12807.2.S1_x_at4/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.16515.1.S1_x_at2/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55700NANA1+32406246..32409194NLI interacting factor-like phosphatase family protein
LOC_Os01g55710Os.54916.1.S1_at1/111+32409864..32410541hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13102.1.S2_at--979--10831Chr01:32384716..32384740 (25 bp)
TTGGGCTTCGCCTTCGCGCCGGCAT
LOC_Os01g55650
Os.13102.1.S2_at--292--4091Chr01:32384640..32384664 (25 bp)
CGACGTCGACCAGGAACAGGTGGCC
LOC_Os01g55650
Os.13102.1.S2_at--707--9351Chr01:32384635..32384659 (25 bp)
TCGACCAGGAACAGGTGGCCGCCGT
LOC_Os01g55650
Os.13102.1.S2_at--789--7771Chr01:32384571..32384595 (25 bp)
GGTCGAACGCCCTGGCGCGCCTGAA
LOC_Os01g55650
Os.13102.1.S2_at--93--9151Chr01:32384443..32384467 (25 bp)
TGCGGGCACCCGTCCTCGTGGCTGT
LOC_Os01g55650
Os.13102.1.S2_at--756--8951Chr01:32384064..32384088 (25 bp)
TGACAGCAGACGGTGCAGTCGAGTA
NONE
Os.13102.1.S2_at--896--1391Chr01:32384057..32384081 (25 bp)
AGACGGTGCAGTCGAGTACCTCCAG
NONE
Os.13102.1.S2_at--855--7332Chr11:5285349..5285373 (25 bp)
GTGCAGTCGAGTACCTCCAGATCGA
NONE
Os.13102.1.S2_at--1064--6072Chr11:5285341..5285365 (25 bp)
GAGTACCTCCAGATCGACGGTGGCA
NONE
Os.13102.1.S2_at--86--1772Chr11:5285337..5285361 (25 bp)
ACCTCCAGATCGACGGTGGCATTGG
NONE
Os.13102.1.S2_at--3--6392Chr11:5285333..5285354 (22 bp)
GATCGACGGTGGCATTGGTGGCGAC
NONE
Target Sequence 
TTGGGCTTCGCCTTCGCGCCGGCATGGGGATCCAGGAGGAGCACGGCGCCGGCGAGGCCGGCGGGTCCGGCCGGCGCGAC
GTCGACCAGGAACAGGTGGCCGCCGTCCACGTCGCGGAGGACCCGCTTGCCCTCCTGGACCTGCAGGTCGAACGCCCTGG
CGCGCCTGAACTCGGTGGCGGGCGGCCAGCCGTGGCCGCCGGTGAAGTGCGCGGGCAGCGACGAGGTCGCGCCGGCGAAG
CCGCACCCGGGCTCCGGGCAGAAGCACGGCGCGTGCGGGCACCCGTCCTCGTGGCTGTCGCTGTCGTGGTAGGCCGTCTT
GGCGTCGCACCCGTAGCCGGCGTTGCGGCAAGGCACCAGGATGGACCTCAGGATTTGCTCCACGGCGAAGCAGCGGTTGT
ACGCGGTGTCCATGGCGCAGACGTGGCACCTGTTCTTGTCCGGGAGCTTGCCATGGCAGGACGAACAAATGACATGCCCA
ACTCCACACTNCNAGACTGGAGGCTTGAGGGGATGACAGCAGACGGTGCAGTCGAGTACCTCCAGATCGACGGTGGCATT
GGTGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13102.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis