Browse Element(s) Details


Os.13517.1.S1_at

Description gb:AK073781.1
DB_XREF= gi:32983804
TID=Os.13517.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068H10, full insert sequence.
FL= gb:AK073781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0807011/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08030Os.4954.1.S1_a_at11/117+4066303..4068434ribose 5-phosphate isomerase, putative, expressed
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016595molecular_functionglutamate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13517.1.S1_at--125--51Chr07:4088144..4088168 (25 bp)
ATTGTGCTGCTCGTGTTTGCGTTCA
LOC_Os07g08070
Os.13517.1.S1_at--305--10291Chr07:4088034..4088153 (25 bp)
TTTGCGTTCATTCAGATCCTATTCC
LOC_Os07g08070
Os.13517.1.S1_at--104--1011Chr07:4088001..4088025 (25 bp)
AGGATCTCCCAGATGATCTATGGCG
LOC_Os07g08070
Os.13517.1.S1_at--895--3551Chr07:4087963..4087987 (25 bp)
CATCTTCAGTGGCTACATCGTCTAC
LOC_Os07g08070
Os.13517.1.S1_at--618--1071Chr07:4087830..4087854 (25 bp)
AGGGCAGCCGACTGAGTTCCTCGCA
LOC_Os07g08070
Os.13517.1.S1_at--48--3551Chr07:4087807..4087831 (25 bp)
CATCGCGTCACATCGTGTTCATATA
LOC_Os07g08070
Os.13517.1.S1_at--11--7371Chr07:4087765..4087789 (25 bp)
GTGAAAATGCTCTGCCTTTATCATG
LOC_Os07g08070
Os.13517.1.S1_at--549--3671Chr07:4087750..4087774 (25 bp)
CTTTATCATGAGTCGCGTACCCAAA
LOC_Os07g08070
Os.13517.1.S1_at--643--6251Chr07:4087696..4087720 (25 bp)
GATGGTCTTTTATCATGCTGTGTTC
LOC_Os07g08070
Os.13517.1.S1_at--321--4731Chr07:4087680..4087704 (25 bp)
GCTGTGTTCAACCTAGTGATCTTAT
LOC_Os07g08070
Os.13517.1.S1_at--401--6411Chr07:4087562..4087586 (25 bp)
GATCATGGATGGCTTGGTTTACCTT
LOC_Os07g08070
Target Sequence 
ATTGTGCTGCTCGTGTTTGCGTTCATTCAGATCCTATTCCCGCTGGGCAGGATCTCCCAGATGATCTATGGCGGGATCGC
GTCGCTCATCTTCAGTGGCTACATCGTCTACGACACGGACAACATCATCAAGCGCTACACCTACGACCAGTACGTCTGGG
CCGCCGTCTCCCTCTACCTCGACGTCATCAACCTCTTCCTCTCCCTCATGACCCTCTTCAGGGCAGCCGACTGAGTTCCT
CGCATCGCGTCACATCGTGTTCATATACGTTTTCATCAGTGAATGTGAAAATGCTCTGCCTTTATCATGAGTCGCGTACC
CAAAAACAACAATTGTATAGATGCCACAAGTAGGATGGTCTTTTATCATGCTGTGTTCAACCTAGTGATCTTATCTACGT
AGGAAATGCGAACAAATTTAGATTCTATATGGATATGGAGGTGATGTTGGATTTGGGTTAATTTGCTTGATGTATGGTGG
ACGGATGGATCATGGATGGCTTGGTTTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis