Browse Element(s) Details


Os.1352.1.S1_at

Description gb:AK073123.1
DB_XREF= gi:32983146
TID=Os.1352.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033010M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033010M12, full insert sequence.
FL= gb:AK073123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43790Os.53660.1.S1_at11/112+26416316..26417616AP2 domain containing protein, expressed
LOC_Os02g43800OsAffx.22848.4.S1_at2/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.4.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.3.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43810Os.1352.1.S1_at11/112+26436520..26438702expressed protein
LOC_Os02g43820Os.38982.1.S1_at11/112+26450581..26451879AP2 domain containing protein, expressed
LOC_Os02g43830Os.1354.1.S1_a_at11/112+26459827..264634113-isopropylmalate dehydratase, small subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1352.1.S1_at--117--7991Chr02:26438169..26438193 (25 bp)
GGATGTTGGCCTCAATCATGCTGGA
LOC_Os02g43810
Os.1352.1.S1_at--640--9131Chr02:26438187..26438211 (25 bp)
TGCTGGAGCGTACATTACCGATCAT
LOC_Os02g43810
Os.1352.1.S1_at--935--3051Chr02:26438257..26438281 (25 bp)
AATCTCTGTTTTGTCCTTCATGGTA
LOC_Os02g43810
Os.1352.1.S1_at--301--6191Chr02:26438286..26438310 (25 bp)
GAGGCAGTGGTCTGATCCTAACCGC
LOC_Os02g43810
Os.1352.1.S1_at--851--9251Chr02:26438301..26438325 (25 bp)
TCCTAACCGCTCATGGATCCAGATG
LOC_Os02g43810
Os.1352.1.S1_at--309--2791Chr02:26438330..26438354 (25 bp)
AAGAGGTAATGCTGCGCTTGCTTCA
LOC_Os02g43810
Os.1352.1.S1_at--943--10391Chr02:26438406..26438430 (25 bp)
TTTTGATGGCAAACCTCGCAGTCTG
LOC_Os02g43810
Os.1352.1.S1_at--822--9351Chr02:26438421..26438445 (25 bp)
TCGCAGTCTGCTCATGCATTTTGAA
LOC_Os02g43810
Os.1352.1.S1_at--56--9951Chr02:26438491..26438515 (25 bp)
TAGCTTTTTTACTCCCGTCAGGGAT
LOC_Os02g43810
Os.1352.1.S1_at--650--6131Chr02:26438547..26438571 (25 bp)
GAGGGTCTTGGATACTTTCATCCGT
LOC_Os02g43810
Os.1352.1.S1_at--384--1931Chr02:26438581..26438605 (25 bp)
ACGGTATCCCATTCCATAAGTTGTT
LOC_Os02g43810
Target Sequence 
GGATGTTGGCCTCAATCATGCTGGAGCGTACATTACCGATCATGCAGTGATTAAGGAGATAGCAAATTATCTTATGCACA
CTAGTAAGAATCTCTGTTTTGTCCTTCATGGTACTCCGAGGCAGTGGTCTGATCCTAACCGCTCATGGATCCAGATGGAG
AAAGAGGTAATGCTGCGCTTGCTTCAAGATGAAGCTCAAAGGTGTGAAGGGAGACTTGTGTTATCCCAAAAGAGATATTT
TGATGGCAAACCTCGCAGTCTGCTCATGCATTTTGAAATTTTGGAAGTAATGGACATAGGCTGACTCTATGTAAACGGTC
TGTAGCTTTTTTACTCCCGTCAGGGATATGCATAGAATACCAGAATGTGAATATATCTGAGGGTCTTGGATACTTTCATC
CGTGCTGACTTCACGGTATCCCATTCCATAAGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis