Browse Element(s) Details


Os.13717.1.S1_at

Description gb:AK063872.1
DB_XREF= gi:32973890
TID=Os.13717.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0047B19.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E10, full insert sequence.
FL= gb:AK063872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1530011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15260OsAffx.8332.1.S1_at10/1110+7761095..7762097hypothetical protein
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein
LOC_Os10g15310Os.11953.1.S1_at8/1110+7788439..7790310hypothetical protein
LOC_Os10g15310OsAffx.24767.1.S1_x_at1/1110+7788439..7790310hypothetical protein
LOC_Os10g15320OsAffx.18258.1.S1_at11/1110+7791909..7792637hypothetical protein
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13717.1.S1_at--392--2951Chr10:7782718..7782742 (25 bp)
AAGGCCGAGCCTAGCGGTGGCAACA
LOC_Os10g15300
Os.13717.1.S1_at--535--9531Chr10:7782806..7782830 (25 bp)
TCTACACGCTCAAGACAACGGGCTG
LOC_Os10g15300
Os.13717.1.S1_at--913--4111Chr10:7782864..7782888 (25 bp)
CGCAGCGGAGGGTGTTAGCTACCTT
LOC_Os10g15300
Os.13717.1.S1_at--615--7231Chr10:7782912..7782936 (25 bp)
GTCGCTGACGACGAAGGTGCGCACA
LOC_Os10g15300
Os.13717.1.S1_at--886--1331Chr10:7782981..7783005 (25 bp)
AGAGGGCGTGTCGTATCTAGCTGCC
LOC_Os10g15300
Os.13717.1.S1_at--304--71Chr10:7783012..7783036 (25 bp)
ATTGCTGTCGTCTTCGGGTTCCAGT
LOC_Os10g15300
Os.13717.1.S1_at--1100--10671Chr10:7783030..7783054 (25 bp)
TTCCAGTTCTTCGAGGTTGGGTCGC
LOC_Os10g15300
Os.13717.1.S1_at--99--3511Chr10:7783070..7783094 (25 bp)
CATCGGACCAGTGTTTTGGCTAGGT
LOC_Os10g15300
Os.13717.1.S1_at--635--6531Chr10:7783097..7783121 (25 bp)
GATTTTGGGAACTCACATGTTTTCG
LOC_Os10g15300
Os.13717.1.S1_at--563--7351Chr10:7783176..7783200 (25 bp)
GTGCAATTATCGTGCTCAATTCCGA
LOC_Os10g15300
Os.13717.1.S1_at--1147--3151Chr10:7783193..7783217 (25 bp)
AATTCCGATGCTTTTCTGCTGGAAG
LOC_Os10g15300
Target Sequence 
AAGGCCGAGCCTAGCGGTGGCAACAGCACCCTCGAGCTCGCCGCCGGTGCGGCCGGGCTGGCGTCTAGCTCGGTCGTTGC
CTGGTCCCTCTACACGCTCAAGACAACGGGCTGCGGCCTCCCACCGGGCCCCGGTGGCGCTCTCGGCGCAGCGGAGGGTG
TTAGCTACCTTGTGGTGGCGGCGCTGATTGGGTGGTCGCTGACGACGAAGGTGCGCACAGGGTCGGGCCTCCCGGCCGGG
CCGTTCGGACTCCTCGGCGCCGCAGAGGGCGTGTCGTATCTAGCTGCCGCTGCCATTGCTGTCGTCTTCGGGTTCCAGTT
CTTCGAGGTTGGGTCGCTCCCGGGTCCATTGCCATCGGACCAGTGTTTTGGCTAGGTGGGATTTTGGGAACTCACATGTT
TTCGTGAGTTGAATATGTTATTAGTAACTGAACATACTACCCTGTTAATCTTAGTTTTGTGCAATTATCGTGCTCAATTC
CGATGCTTTTCTGCTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis