Browse Element(s) Details


Os.13903.1.S1_at

Description gb:AK066651.1
DB_XREF= gi:32976669
TID=Os.13903.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074G10, full insert sequence.
FL= gb:AK066651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0910010/11anther ethylene-upregulated protein ER1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09070Os.43892.1.S1_at11/113+4681084..4684605leucine-rich repeat family protein, putative, expressed
LOC_Os03g09080Os.17714.1.S1_at10/113+4694250..4698364Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os03g09090Os.23231.1.A1_at10/113+4699765..4703179expressed protein
LOC_Os03g09090Os.53282.1.S1_at1/113+4699765..4703179expressed protein
LOC_Os03g09100Os.13903.1.S1_at10/113+4705256..4713120anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os03g09110Os.7871.1.S1_at10/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09110Os.50644.2.S1_x_at1/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09120Os.52977.1.S1_at11/113+4727821..4729370expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13903.1.S1_at--341--4351Chr03:4705824..4705848 (25 bp)
CCAGATGCCAGGGATCAGTACCAGA
LOC_Os03g09100
Os.13903.1.S1_at--643--5011Chr03:4705674..4705798 (25 bp)
GCAGGAATCCCAGGCTATGCAAGAA
LOC_Os03g09100
Os.13903.1.S1_at--36--5291Chr03:4705619..4705643 (25 bp)
GAAGGCCTTTTGATGAGCGAATTCA
LOC_Os03g09100
Os.13903.1.S1_at--666--671Chr03:4705582..4705606 (25 bp)
ATGACGACATGCCAACGCCTGGATA
LOC_Os03g09100
Os.13903.1.S1_at--773--7931Chr03:4705562..4705586 (25 bp)
GGATATTTCTAGGATCTAACGTCTT
LOC_Os03g09100
Os.13903.1.S1_at--1012--9791Chr03:4705546..4705570 (25 bp)
TAACGTCTTGTGTATGCGCTTGTAA
LOC_Os03g09100
Os.13903.1.S1_at--948--4551Chr03:4705531..4705555 (25 bp)
GCGCTTGTAAATTACTTCCAGGTCT
LOC_Os03g09100
Os.13903.1.S1_at--1076--2051Chr03:4705518..4705542 (25 bp)
ACTTCCAGGTCTTTGTACATAGCAT
LOC_Os03g09100
Os.13903.1.S1_at--484--6471Chr03:4705484..4705508 (25 bp)
GATAACCTGTAGTTGCATTGCTAAA
LOC_Os03g09100
Os.13903.1.S1_at--915--2691Chr03:4705341..4705365 (25 bp)
AAGCTAGGTCTAGAATCTGCAGATA
LOC_Os03g09100
Os.13903.1.S1_at--1110--6051NONE
GAGTTCCAACGGTTGTCCAGGCTGA
NONE
Target Sequence 
CCAGATGCCAGGGATCAGTACCAGAGGATTTTGACGGTGGTAACTAAAATGCAGGAATCCCAGGCTATGCAAGAAAAGAT
GCTCGAGGAGTCGACAGAGATGGATGAAGGCCTTTTGATGAGCGAATTCAAAGAACTGTGGGATGACGACATGCCAACGC
CTGGATATTTCTAGGATCTAACGTCTTGTGTATGCGCTTGTAAATTACTTCCAGGTCTTTGTACATAGCATTACCAAATC
GATAACCTGTAGTTGCATTGCTAAATTTTTGTATGTTTTGAAGTTTGGTTGGTACANTAATTTTTGTATGCGTTTTGTAC
AGTAATTCTTCTGTAAAATGTATCAAAATGATGTAGCTCGTGAAAAGCTTCAGATAGTTGGAGAAGCTAGGTCTAGAATC
TGCAGATAGTTNGTGTAANGAAAAATGTNNNATCCTTGCTATGTTTTGACNNANNNNNNNTCGAGTTCCAACGGTTGTCC
AGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis