Browse Element(s) Details


Os.13993.1.S1_at

Description gb:AK058477.1
DB_XREF= gi:32968495
TID=Os.13993.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.13993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C06, full insert sequence.
FL= gb:AK058477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3372011/11Malate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33680Os.47558.1.S1_at11/118+20901358..20903220expressed protein
LOC_Os08g33690NANA8+20903860..20904435expressed protein
LOC_Os08g33700Os.49953.1.S1_at11/118+20910161..20914410pentatricopeptide, putative, expressed
LOC_Os08g33710Os.11018.1.S1_at11/118+20917866..20920003Extracellular ribonuclease LE precursor, putative, expressed
LOC_Os08g33720Os.13993.1.S1_at11/118+20921818..20924585Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os08g33730NANA8+20929688..20930134hypothetical protein
LOC_Os08g33740OsAffx.6015.1.S1_at11/118+20945297..20953346Glycosyltransferase, putative, expressed
LOC_Os08g33740OsAffx.14299.2.S1_at1/118+20945297..20953346Glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0042579cellular_componentmicrobody
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13993.1.S1_at--654--1251Chr08:20922343..20922367 (25 bp)
AGATTCGTCGAGTCATCTCTGCGTG
LOC_Os08g33720
Os.13993.1.S1_at--232--2071Chr08:20922317..20922341 (25 bp)
ACTTGCTGGCGACCCTGATGTTTAT
LOC_Os08g33720
Os.13993.1.S1_at--603--6111Chr08:20922292..20922316 (25 bp)
GAGTGCACATTCGTTCAGTCTGAGT
LOC_Os08g33720
Os.13993.1.S1_at--1055--1131Chr08:20922276..20922300 (25 bp)
AGTCTGAGTTAACCGAGCTGCCGTT
LOC_Os08g33720
Os.13993.1.S1_at--1005--9171Chr08:20922258..20922282 (25 bp)
TGCCGTTCTTTGCATCCAGAGTTAA
LOC_Os08g33720
Os.13993.1.S1_at--39--2591Chr08:20922223..20922247 (25 bp)
AACGGTGTCGAGTCCATCATTTCTG
LOC_Os08g33720
Os.13993.1.S1_at--26--8331Chr08:20922025..20922049 (25 bp)
GGCTCTTGATACCTTTTAGTTTCCA
LOC_Os08g33720
Os.13993.1.S1_at--742--1471Chr08:20921996..20922020 (25 bp)
AGAATTTTCTCTTGTCGACGCGTAG
LOC_Os08g33720
Os.13993.1.S1_at--944--911Chr08:20921967..20921991 (25 bp)
AGGCTCCAGACTATTTGCATTGTAT
LOC_Os08g33720
Os.13993.1.S1_at--795--6871Chr08:20921946..20921970 (25 bp)
GTATTGCCATTGCTAATTTCTTCAG
LOC_Os08g33720
Os.13993.1.S1_at--569--4372Chr11:10673193..10673602 (25 bp)
CCAAACTGCTGCCTGTTTTAACACA
NONE
Target Sequence 
AGATTCGTCGAGTCATCTCTGCGTGCACTTGCTGGCGACCCTGATGTTTATGAGTGCACATTCGTTCAGTCTGAGTTAAC
CGAGCTGCCGTTCTTTGCATCCAGAGTTAAGCTTGGAAAGAACGGTGTCGAGTCCATCATTTCTGCTGACCTTGAGGGAG
TGACCGAGTACGAGGCCAAGGCACTTGANGCATTGAAGTCTGAGTTGAAGGCCAGTATCGAGAAGGGCATCGAGTTCGTC
CACAAACAGCAGACAGCNGCGGCATCTGTTTNGAAGCAAGCNAGAATGGAATCAANTACAAGGAAGATAATAAACGGAAG
AGGCTCTTGATACCTTTTAGTTTCCAGGCTAGAATTTTCTCTTGTCGACGCGTAGGGANAGGCTCCAGACTATTTGCATT
GTATTGCCATTGCTAATTTCTTCAGAATACATGAGGGNCGATAACGCCCAAACTGCTGCCTGTTTTAACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis