Browse Element(s) Details


Os.13995.1.S1_at

Description gb:AK071955.1
DB_XREF= gi:32981978
TID=Os.13995.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013081M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013081M10, full insert sequence.
FL= gb:AK071955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3447011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34450OsAffx.23944.2.S1_at11/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34450Os.35524.1.S3_at1/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13995.1.S1_at--991--6591Chr05:20356068..20356092 (25 bp)
GATTGTGCTTGTTCATAACCGATAC
LOC_Os05g34470
Os.13995.1.S1_at--590--10251Chr05:20356353..20356377 (25 bp)
TTTGGGAATACAATCTGCCTTCACC
LOC_Os05g34470
Os.13995.1.S1_at--79--10051Chr05:20356491..20356515 (25 bp)
TAGATGCCTGTGCAGAACCTGACCT
LOC_Os05g34470
Os.13995.1.S1_at--185--2631Chr05:20356506..20356530 (25 bp)
AACCTGACCTTGTGAAGGCCCTGAA
LOC_Os05g34470
Os.13995.1.S1_at--1131--8391Chr05:20356522..20356546 (25 bp)
GGCCCTGAATGTTTCTGGTTTCCCA
LOC_Os05g34470
Os.13995.1.S1_at--577--6151Chr05:20356547..20356571 (25 bp)
GAGGTCCTCTTCACTAATGCAGGGA
LOC_Os05g34470
Os.13995.1.S1_at--990--10031Chr05:20356575..20356698 (25 bp)
TAGTTCACCGTGACAAAGTCGTCCG
LOC_Os05g34470
Os.13995.1.S1_at--954--2311Chr05:20356690..20356712 (23 bp)
AAAGTCGTCCGATCGGCTGAGGAAT
LOC_Os05g34470
Os.13995.1.S1_at--627--2991Chr05:20356720..20356744 (25 bp)
AATGATGGCATTCTTCTACTATAAA
LOC_Os05g34470
Os.13995.1.S1_at--211--9891Chr05:20356736..20356760 (25 bp)
TACTATAAAGCAGCAAGGCCGCCTT
LOC_Os05g34470
Os.13995.1.S1_at--502--7051Chr05:20356916..20356940 (25 bp)
GTAACACAGGCATCTATTAGCATCT
LOC_Os05g34470
Target Sequence 
GATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGA
TGTTTTGGGAATACAATCTGCCTTCACCNAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTG
AATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGA
GGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTC
AAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTANGTTGTATTTTACATCAGTGTGCATTGTT
AGAAACNTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis