Browse Element(s) Details


Os.140.3.S1_x_at

Description gb:AK111712.1
DB_XREF= gi:37988375
TID=Os.140.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for EL3 gene, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025J17, full insert sequence.
FL= gb:AK111712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5881011/11CAF1 family ribonuclease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os04g58810Os.140.3.S1_x_at11/114+34761534..34762752CAF1 family ribonuclease containing protein, expressed
LOC_Os04g58820Os.7191.1.A1_at11/114+34769918..34770911uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os04g58830Os.10979.1.S1_at11/114+34773043..34775731Ribosome biogenesis regulatory protein containing protein, expressed
LOC_Os04g58840Os.51017.1.S1_at8/114+34778015..34780007Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58850Os.7901.1.S1_at11/114+34781950..34783076Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.140.3.S1_x_at--1079--1931Chr04:34762222..34762246 (25 bp)
ACGGCGCCGTCAAGTGGGTCACCTT
LOC_Os04g58810
Os.140.3.S1_x_at--735--2691Chr04:34762296..34762320 (25 bp)
AAGCTGCCGAGGTCCATGGCCGAGT
LOC_Os04g58810
Os.140.3.S1_x_at--157--9571Chr04:34762342..34762366 (25 bp)
TCTTCGGCGACGAGGTGTACGACGT
LOC_Os04g58810
Os.140.3.S1_x_at--491--5391Chr04:34762367..34762391 (25 bp)
GAAGCACATGATGCGGCACTGCGGC
LOC_Os04g58810
Os.140.3.S1_x_at--185--2691Chr04:34762530..34762554 (25 bp)
AAGCATGGCGTCGAGGCCTACCAAG
LOC_Os04g58810
Os.140.3.S1_x_at--456--2951Chr04:34762552..34762576 (25 bp)
AAGGCGTGCTCTTCGGCCTGGAGCT
LOC_Os04g58810
Os.140.3.S1_x_at--842--1631Chr04:34762625..34762649 (25 bp)
AGCGAGATGATACGATCTCCTCTCC
LOC_Os04g58810
Os.140.3.S1_x_at--515--3771Chr04:34762644..34762668 (25 bp)
CTCTCCTCCGCTGTAAAATTTGTTG
LOC_Os04g58810
Os.140.3.S1_x_at--377--2451Chr04:34762658..34762682 (25 bp)
AAAATTTGTTGATTCGTCGTCTGCA
LOC_Os04g58810
Os.140.3.S1_x_at--360--9411Chr04:34762671..34762695 (25 bp)
TCGTCGTCTGCAAGAAAGGATTTCT
LOC_Os04g58810
Os.140.3.S1_x_at--660--2911Chr04:34762686..34762710 (25 bp)
AAGGATTTCTTTCGGCAGATGTACA
LOC_Os04g58810
Target Sequence 
ACGGCGCCGTCAAGTGGGTCACCTTCCACTCCGCCTACGACTTCGCCTACCTGGTCAAGCTCCTCATGGGGCGGAAGCTG
CCGAGGTCCATGGCCGAGTNCCTGAACCNGGTGCGCGTCTTCTTCGGCGACGAGGTGTACGACGTGAAGCACATGATGCG
GCACTGCGGCGGCGAGCTGTACGGCGGGCTGGAGCGCGTGGCGGCGGCGCTGCAGGTGAANCGCGCNGCGGGGCGGTGNC
ACCANGCCGNCTCCGACAGCTTGCTCACCTGGGACNTCTTCCGGCGGATNCGGGAGCTCTANTTCCTCAAGCATGGCGTC
GAGGCCTACCAAGGCGTGCTCTTCGGCCTGGAGCTCGACATGGACATGCCCAGCAACAAAACACCCTCGCTGCCGCTGGT
GGCAGCGAGATGATACGATCTCCTCTCCTCCGCTGTAAAATTTGTTGATTCGTCGTCTGCAAGAAAGGATTTCTTTCGGC
AGATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.140.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis