Browse Element(s) Details


Os.14040.1.S1_at

Description gb:AK103246.1
DB_XREF= gi:32988455
TID=Os.14040.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0091N21.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123K10, full insert sequence.
FL= gb:AK103246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3648011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36450Os.47130.4.A1_x_at1/1110+19171247..19171573retrotransposon protein, putative, unclassified
LOC_Os10g36450Os.37083.2.S1_at1/1110+19171247..19171573retrotransposon protein, putative, unclassified
LOC_Os10g36460NANA10+19175966..19179679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36470Os.6154.1.S1_a_at11/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36470OsAffx.28284.1.S1_at3/1110+19182941..19187182methionine aminopeptidase 1, putative, expressed
LOC_Os10g36490Os.17209.1.S1_at11/1110+19187274..19195752tubulin folding cofactor D, putative, expressed
LOC_Os10g36480Os.14040.1.S1_at11/1110+19195983..19198906expressed protein
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14040.1.S1_at--403--10091Chr10:19197247..19197271 (25 bp)
TAGGCGGACAATGGCTGTGCTGCTC
LOC_Os10g36480
Os.14040.1.S1_at--415--371Chr10:19197292..19197316 (25 bp)
ATCAATTGCTGTTGCATTCTCTGTG
LOC_Os10g36480
Os.14040.1.S1_at--742--7531Chr10:19197314..19197338 (25 bp)
GTGGCGTGCATTATTCGGTCAGAGT
LOC_Os10g36480
Os.14040.1.S1_at--19--7831Chr10:19197330..19197349 (20 bp)
GGTCAGAGTTGTTCTTCAAGATCAC
LOC_Os10g36480
Os.14040.1.S1_at--603--8811Chr10:19198425..19198535 (25 bp)
TGTTGCTCTTGGTGTCCTGCTTCAA
LOC_Os10g36480
Os.14040.1.S1_at--727--10591Chr10:19198564..19198588 (25 bp)
TTCTGCAAAATATGTCTCCTCCCAG
LOC_Os10g36480
Os.14040.1.S1_at--56--8251Chr10:19198616..19198640 (25 bp)
GGCACTTGTGCTTTACCATTAGAAA
LOC_Os10g36480
Os.14040.1.S1_at--872--671Chr10:19198717..19198741 (25 bp)
ATGACAACCATGACTCCATTCTGCT
LOC_Os10g36480
Os.14040.1.S1_at--1057--1191Chr10:19198793..19198817 (25 bp)
AGTATCGTCATGTTGTTTCGCCCAG
LOC_Os10g36480
Os.14040.1.S1_at--794--8771Chr10:19198820..19198844 (25 bp)
TGTTACTGCTGTCCAGTCCAGTATA
LOC_Os10g36480
Os.14040.1.S1_at--27--4491Chr10:19198854..19198878 (25 bp)
GCCTGGTTCTAAATTGCTCTGTTCA
LOC_Os10g36480
Target Sequence 
TAGGCGGACAATGGCTGTGCTGCTCCGGATGTACACAAGCTTGTCATCAATTGCTGTTGCATTCTCTGTGGCGTGCATTA
TTCGGTCAGAGTTGTTCTTCAAGATCACGAAGCAAAATACANGAGTCCATAACAAGCCATGAACTATTGGAGGTGGTTCG
TGTTGCTCTTGGTGTCCTGCTTCAATTGGTGGTTATAGCTACAACAACNCNGACTTCTGCAAAATATGTCTCCTCCCAGG
AGAGCTTCATGAAAATGTTGTGACATGGCACTTGTGCTTTACCATTAGAAACAACTACTCATTTTTGTACTTGTAGATTG
CAACTTGCAAGAGACTTGTAATGAAGCGGCAATTGGTTCACAAATCCATGACAACCATGACTCCATTCTGCTTCTTCCAT
TTGTAGAACTNGGACTGGAAACNTTGAAAGCATAGATTACATTGCAGTATCGTCATGTTGTTTCGCCCAGGCTGTTACTG
CTGTCCAGTCCAGTATATGGACGCGTGCCTGGTTCTAAATTGCTCTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis