Browse Element(s) Details


Os.14076.1.S1_s_at

Description gb:AK071867.1
DB_XREF= gi:32981890
TID=Os.14076.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117I15, full insert sequence.
FL= gb:AK071867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4482011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein
LOC_Os02g44830OsAffx.24729.1.S1_at11/112+27147320..27148582hypothetical protein
LOC_Os02g44840NANA2+27149615..27150229hypothetical protein
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14076.1.S1_s_at--136--9171Chr02:27131923..27131947 (25 bp)
TGCGCGCGGTGTACTTCGTGCACCC
LOC_Os02g44820
Os.14076.1.S1_s_at--678--7771Chr02:27131532..27131556 (25 bp)
GGTGCATCTCGTAATCGTGGTGGCC
LOC_Os02g44820
Os.14076.1.S1_s_at--882--451Chr02:27131527..27131551 (25 bp)
ATCTCGTAATCGTGGTGGCCGCTCG
LOC_Os02g44820
Os.14076.1.S1_s_at--221--8471Chr02:27131512..27131536 (25 bp)
TGGCCGCTCGACTGTAGCATCCGTA
LOC_Os02g44820
Os.14076.1.S1_s_at--870--1951Chr02:27131502..27131526 (25 bp)
ACTGTAGCATCCGTAGCTGGCCTCG
LOC_Os02g44820
Os.14076.1.S1_s_at--924--4511Chr02:27131478..27131502 (25 bp)
GCCCCGGTCCTATATTCGTAGCTAG
LOC_Os02g44820
Os.14076.1.S1_s_at--183--10631Chr02:27131464..27131488 (25 bp)
TTCGTAGCTAGCGAAGGCACTGCCG
LOC_Os02g44820
Os.14076.1.S1_s_at--853--2931Chr02:27131451..27131475 (25 bp)
AAGGCACTGCCGCACTGTCGTAGTT
LOC_Os02g44820
Os.14076.1.S1_s_at--853--1951Chr02:27131438..27131462 (25 bp)
ACTGTCGTAGTTTGCAGGCCCTGTT
LOC_Os02g44820
Os.14076.1.S1_s_at--396--1191Chr02:27131430..27131454 (25 bp)
AGTTTGCAGGCCCTGTTGTTCTTCG
LOC_Os02g44820
Os.14076.1.S1_s_at--864--10791Chr02:27131415..27131439 (25 bp)
TTGTTCTTCGTTCCATCTGTACAAA
LOC_Os02g44820
Target Sequence 
TGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCC
GGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCC
GGAATGCGCGCGCCNGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGT
GCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCNTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTC
GACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGC
AGGCCCTGTTGTTCTTCGTTCCATCTGTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14076.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis