Browse Element(s) Details


Os.14084.1.S1_at

Description gb:AK061773.1
DB_XREF= gi:32971791
TID=Os.14084.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D01, full insert sequence.
FL= gb:AK105896.1 gb:AK098986.1 gb:AK061773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6192011/11electron transfer flavoprotein, alpha subunit containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61870NANA3+35014043..35017247transposon protein, putative, Mariner sub-class
LOC_Os03g61890Os.5351.2.S1_s_at11/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61890Os.5351.1.S1_at10/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61900Os.5024.1.S1_at11/113+35029607..35030556expressed protein
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14084.1.S1_at--368--1431Chr03:35041409..35041433 (25 bp)
AGAACGGCCCGATCTTGCAAATGCA
LOC_Os03g61920
Os.14084.1.S1_at--512--5131Chr03:35041425..35041449 (25 bp)
GCAAATGCACCCGTAGTAGTAACTG
LOC_Os03g61920
Os.14084.1.S1_at--617--9131Chr03:35041673..35041697 (25 bp)
TGCGACCAGAGCTGCCGTAGATGCA
LOC_Os03g61920
Os.14084.1.S1_at--962--1231Chr03:35042033..35042057 (25 bp)
AGTTGCGCCTGAGCTCTATATGGCA
LOC_Os03g61920
Os.14084.1.S1_at--273--4371Chr03:35042104..35042128 (25 bp)
CCAAGGTTATCGTGGCTGTCAACAA
LOC_Os03g61920
Os.14084.1.S1_at--124--6351Chr03:35042136..35042267 (25 bp)
GATGCTCCCATATTTCAGGTTGCGG
LOC_Os03g61920
Os.14084.1.S1_at--150--8291Chr03:35042273..35042297 (25 bp)
GGCATTGTTGCTGATCTATTCGAAG
LOC_Os03g61920
Os.14084.1.S1_at--459--4631Chr03:35042339..35042363 (25 bp)
GCGTGCTAACATGATGATCCGTGTC
LOC_Os03g61920
Os.14084.1.S1_at--997--6371Chr03:35042354..35042378 (25 bp)
GATCCGTGTCCATGTCATATTTGTT
LOC_Os03g61920
Os.14084.1.S1_at--620--2671Chr03:35042399..35042423 (25 bp)
AAGCGCCCTTGTAATGTGATTCTGC
LOC_Os03g61920
Os.14084.1.S1_at--737--7391Chr03:35042471..35042495 (25 bp)
GTGATGTCGCTTCCTGTGCAAATAC
LOC_Os03g61920
Target Sequence 
AGAACGGCCCGATCTTGCAAATGCACCCGTAGTAGTAACTGGAGGCAGAGGTTTAAAAAGTGCTGAGAATTTCAAAGTAT
TGGAGCAGCTTGCTGAGAAACTTGGAGCAGCAGTGGGTGCGACCAGAGCTGCCGTAGATGCAGGATTTGTTCCCAATGAA
CTTCAGGTTGGTCAGACTGGGAAAATAGTTGCGCCTGAGCTCTATATGGCATTTGGAGTATCCGGAGCAATACAACACTT
GGCAGGAATGAGAGATTCCAAGGTTATCGTGGCTGTCAACAAAGATGCAGATGCTCCCATATTTCAGGTTGCGGACTATG
GCATTGTTGCTGATCTATTCGAAGTTCTTGACGAACTGTTAAAGAAGCTACCTGACAAGAAATGAGCGTGCTAACATGAT
GATCCGTGTCCATGTCATATTTGTTCTAGTGTTCTTAATAATATGAAGCGCCCTTGTAATGTGATTCTGCAAAAATAAGT
GTCATTTCATATGATCACACAAGCACAAACAATAGACGTGATGTCGCTTCCTGTGCAAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis