Browse Element(s) Details


Os.14123.2.S1_at

Description gb:AK061451.1
DB_XREF= gi:32971469
TID=Os.14123.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-F06, full insert sequence.
FL= gb:AK061451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g443909/11peptidyl-tRNA hydrolase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed
LOC_Os05g44410NANA5+25763136..25764371hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14123.2.S1_at--659--8471Chr05:25740902..25740926 (25 bp)
TGGCTGATTCAAAATTGCCGTTGGT
LOC_Os05g44390
Os.14123.2.S1_at--399--3271Chr05:25740893..25740917 (25 bp)
CAAAATTGCCGTTGGTTGTAATCTT
LOC_Os05g44390
Os.14123.2.S1_at--542--6591Chr05:25740883..25740907 (25 bp)
GTTGGTTGTAATCTTTTCCTCCACA
LOC_Os05g44390
Os.14123.2.S1_at--769--7911Chr05:25740880..25740904 (25 bp)
GGTTGTAATCTTTTCCTCCACATGT
LOC_Os05g44390
Os.14123.2.S1_at--560--10671Chr05:25740868..25740892 (25 bp)
TTCCTCCACATGTCATTGTAGTCTA
LOC_Os05g44390
Os.14123.2.S1_at--1111--3291Chr05:25740862..25740886 (25 bp)
CACATGTCATTGTAGTCTACCCACA
LOC_Os05g44390
Os.14123.2.S1_at--51--4251Chr05:25740731..25740755 (25 bp)
CCGTATGTCCAGAGGAAGCACAAAA
LOC_Os05g44390
Os.14123.2.S1_at--402--51Chr05:25740531..25740553 (23 bp)
ATTGTATTGTAGGAGTAGTTCCACA
LOC_Os05g44390
Os.14123.2.S1_at--562--6071NONE
GAGTAGTTCCACAAAGTTCCGATGA
NONE
Os.14123.2.S1_at--326--1231Chr05:25740503..25740537 (25 bp)
AGTTCCGATGAAATTTCTCGCCCTT
LOC_Os05g44390
Os.14123.2.S1_at--331--3991Chr05:25740498..25740522 (25 bp)
CGATGAAATTTCTCGCCCTTTGAAC
NONE
Target Sequence 
TGGCTGATTCAAAATTGCCGTTGGTTGTAATCTTTTCCTCCACATGTCATTGTAGTCTACCCACATGTTAGCGCATTCCA
GCGAGTGGATTTTACTTTGGGACAATGAACAAGTATCTGTAGTTTCGAAGTAGTAGGTTATCACCTTCCTCAAAGTAACG
GATCATATGTACCGTATGTCCAGAGGAAGCACAAAATGCGTAGAGGTGACTTGTCTTGTCAAACATCCTTGGTGTGAAGC
CTCTTGCTGTGAAAGTTCTGTATTCCCAAGTTCCCAACTAGTCCATATCTACTGGGAATTGAATCTCTTTCTTGCAGAGC
TGGAACTTTGTGCACTAGTTCCAACAAAATTAGATTCTTGCAAATATGGAAATATTGTATTGTAGGAGTAGTTCCACAAA
GTTCCGATGAAATTTCTCGCCCTTTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14123.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis