Browse Element(s) Details


Os.14150.1.S1_at

Description gb:AK072892.1
DB_XREF= gi:32982915
TID=Os.14150.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149P20, full insert sequence.
FL= gb:AK072892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3911011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39070Os.54260.1.S1_at11/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39070Os.53520.1.A1_at1/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39080Os.16012.1.S1_at11/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39080OsAffx.13037.1.S1_x_at1/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39090Os.54688.1.S1_at11/1112+24011650..24013552expressed protein
LOC_Os12g39100Os.55696.1.S1_at11/1112+24019122..24021234expressed protein
LOC_Os12g39110Os.14150.1.S1_at11/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.16870.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.19796.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39120Os.22969.1.S1_at11/1112+24032752..24036050protein phosphatase 2C family protein, putative, expressed
LOC_Os12g39130NANA12+24038325..24038936expressed protein
LOC_Os12g39140NANA12+24040447..24041136hypothetical protein
LOC_Os12g39150Os.35344.18.S1_x_at10/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150Os.35344.3.S1_x_at10/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150OsAffx.22940.5.S1_x_at3/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150OsAffx.828.1.S1_x_at1/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39160Os.49678.1.S1_at11/1112+24053641..24056428Lipase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14150.1.S1_at--1112--5451Chr12:24030567..24030591 (25 bp)
GAACTCGCGGGACCTTCAACGGAGT
LOC_Os12g39110
Os.14150.1.S1_at--1046--2571Chr12:24030584..24030608 (25 bp)
AACGGAGTGCTCTATATGCCTGGAG
LOC_Os12g39110
Os.14150.1.S1_at--19--8771Chr12:24030776..24030800 (25 bp)
TGTAGAACCTCTCTTTAAGCCCTTA
LOC_Os12g39110
Os.14150.1.S1_at--555--10491Chr12:24030798..24030822 (25 bp)
TTAACTTTGTCACTGCTCACATGCT
LOC_Os12g39110
Os.14150.1.S1_at--825--611Chr12:24030818..24030842 (25 bp)
ATGCTCTTCTTCCAGTACCAAGTTT
LOC_Os12g39110
Os.14150.1.S1_at--450--2831Chr12:24030908..24030932 (25 bp)
AAGTTAGCATCTTACTGTACCATGA
LOC_Os12g39110
Os.14150.1.S1_at--295--6971Chr12:24030924..24030948 (25 bp)
GTACCATGAATGTGTCTTGAACCTG
LOC_Os12g39110
Os.14150.1.S1_at--841--5411Chr12:24030942..24030966 (25 bp)
GAACCTGACTGGGTTGTTTGCAACT
LOC_Os12g39110
Os.14150.1.S1_at--1056--371Chr12:24030969..24030993 (25 bp)
ATCATGCTCTCTCCATGCATATAGA
LOC_Os12g39110
Os.14150.1.S1_at--985--1592Chr12:24031004..24031028 (25 bp)
AGCTGCTACCTGTTTTTCCATGGAA
LOC_Os12g39110
Os.14150.1.S1_at--92--2711Chr12:24031027..24031051 (25 bp)
AAGCTTTTGTTTGCTCTTCCATGTT
LOC_Os12g39110
Target Sequence 
GAACTCGCGGGACCTTCAACGGAGTGCTCTATATGCCTGGAGAGATGTGGGGATCCAGATGGGCTCCTCGAGCTGCGGTG
CAAGCACATCTTCCACTCGGCCTGCCTCGAGCGATGGCTGCGCTCTCGCAGCGACTGCCCCTACTGCAGGGCCAGCGTGC
TCCTAACAGCAGAAGGATGAGAATTTGAGGATGAAACTAAACCCAGCTCTGTAGAACCTCTCTTTAAGCCCTTAACTTTG
TCACTGCTCACATGCTCTTCTTCCAGTACCAAGTTTTTTCCCCCCTTTGCTGATGAGGCTGTGAAATCTGTGATACTTTT
GTCACTGTGTGAGGCTTCAGAAAGTTAGCATCTTACTGTACCATGAATGTGTCTTGAACCTGACTGGGTTGTTTGCAACT
GGATCATGCTCTCTCCATGCATATAGAGTGAGAGCTGAGCTGCTACCTGTTTTTCCATGGAAGCTTTTGTTTGCTCTTCC
ATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis