Browse Element(s) Details


Os.14207.1.S1_at

Description gb:AK067845.1
DB_XREF= gi:32977863
TID=Os.14207.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124G01, full insert sequence.
FL= gb:AK067845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3473011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed
LOC_Os07g34740Os.27614.1.S1_at11/117+20811188..20816227expressed protein
LOC_Os07g34750OsAffx.28753.1.S1_at11/117+20817190..20820411hypothetical protein
LOC_Os07g34760OsAffx.16559.1.S1_at11/117+20824300..20825519expressed protein
LOC_Os07g34770NANA7+20826052..20832760transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14207.1.S1_at--1113--5371Chr07:20807090..20807111 (22 bp)
GAAGCAATCGTTTACAATGCACTTG
LOC_Os07g34730
Os.14207.1.S1_at--475--3011Chr07:20807075..20807099 (25 bp)
AATGCACTTGGTTAGGCTTATGACA
LOC_Os07g34730
Os.14207.1.S1_at--6--7851Chr07:20807025..20807049 (25 bp)
GGTACTTGGAGCCTCAGTATCTGAG
LOC_Os07g34730
Os.14207.1.S1_at--112--7671Chr07:20806837..20806861 (25 bp)
GGGTATCTGAAACACAACCGCCCTA
LOC_Os07g34730
Os.14207.1.S1_at--667--1451Chr07:20806686..20806706 (21 bp)
AGAAGCAGCGCATCTTTGCTGACTC
LOC_Os07g34730
Os.14207.1.S1_at--263--10711Chr07:20806671..20806695 (25 bp)
TTGCTGACTCTGTGTTGCGGAGACT
LOC_Os07g34730
Os.14207.1.S1_at--1148--3071Chr07:20806624..20806648 (25 bp)
AATCAACTCTGGTGCTCATTGGTGA
LOC_Os07g34730
Os.14207.1.S1_at--29--6111Chr07:20806601..20806625 (25 bp)
GAGTCCAGGTTACTAATGTCCTAGT
LOC_Os07g34730
Os.14207.1.S1_at--549--771Chr07:20806586..20806610 (25 bp)
ATGTCCTAGTGTGTATCTGGGTCTC
LOC_Os07g34730
Os.14207.1.S1_at--515--10211Chr07:20806420..20806444 (25 bp)
TATTAATACTTACCCTCTGCCTGAT
LOC_Os07g34730
Os.14207.1.S1_at--1059--5231Chr07:20806357..20806381 (25 bp)
GAATAATCTTTCCTGAGTCCATGTT
LOC_Os07g34730
Target Sequence 
GAAGCAATCGTTTACAATGCACTTGGTTAGGCTTATGACATCATGGGCAGTTGTGTGTGATGTATGGTACTTGGAGCCTC
AGTATCTGAGGGATGGAGAAACAGCAATTGAATTTGCTGAAAGAGTAAGAGACATGATAGCTGCTAGAGCTGGTCTTAAG
AAGGTTCCGTGGGACGGGTATCTGAAACACAACCGCCCTAGTCCCAAACACACTGAAGAGAAGCAGCGCATCTTTGCTGA
CTCTGTGTTGCGGAGACTGGAGGAAAGCTAAACAGATATCAATCAACTCTGGTGCTCATTGGTGAGTCCAGGTTACTAAT
GTCCTAGTGTGTATCTGGGTCTCTGGAGTATGTGGAAATTACCACNTGCAGTTTTGTTGTAAATTGTTTGCAGCTTGACA
GAATCAACATTTAATAGCCTGTATTAGCCAAGATTTTATGATTGGTTAGGGTTAACACATAAATATTATACCTTCCCAAA
TGATGTATTAATACTTACCCTCTGCCTGATGCCCTGATCATTCTCATCATCTCATGGGTATACNTTGTGAATAATCTTTC
CTGAGTCCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis