Browse Element(s) Details


Os.14271.1.S1_at

Description gb:AK061072.1
DB_XREF= gi:32971090
TID=Os.14271.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribonucleoprotein (P0519E12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D01, full insert sequence.
FL= gb:AK061072.1 gb:AK058579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4381011/1129 kDa ribonucleoprotein A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43770Os.12208.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43770OsAffx.5627.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43780OsAffx.22848.4.S1_at3/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43780OsAffx.22848.4.S1_x_at2/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43790NANA7+26198027..26202728retrotransposon protein, putative, unclassified
LOC_Os07g43800Os.37996.1.S1_at11/117+26206842..26207760EF hand family protein, expressed
LOC_Os07g43810Os.14271.1.S1_at11/117+26210054..2621214729 kDa ribonucleoprotein A, chloroplast precursor, putative, expressed
LOC_Os07g43820Os.41106.1.S1_at11/117+26213400..26214563Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os07g43830OsAffx.28890.1.S1_at9/117+26215878..26217250expressed protein
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14271.1.S1_at--273--91Chr07:26211438..26211462 (25 bp)
ATTCCAAGGAAGACCTCTGAGGGTA
LOC_Os07g43810
Os.14271.1.S1_at--193--4471Chr07:26211480..26211504 (25 bp)
GCCTCGGGATGATTTCGCGCCAAGA
LOC_Os07g43810
Os.14271.1.S1_at--587--6531Chr07:26211490..26211514 (25 bp)
GATTTCGCGCCAAGATCACCTAGGG
LOC_Os07g43810
Os.14271.1.S1_at--39--6571Chr07:26211532..26211556 (25 bp)
GATTCATCCAACAAGCTCTATGTAG
LOC_Os07g43810
Os.14271.1.S1_at--812--3771Chr07:26211582..26211606 (25 bp)
CTCGACACTCGAGAACCTGTTCAGT
LOC_Os07g43810
Os.14271.1.S1_at--901--4271Chr07:26211683..26211707 (25 bp)
CCTATGGCTCCGCTGAAGAAGTCAA
LOC_Os07g43810
Os.14271.1.S1_at--659--371Chr07:26211717..26211896 (25 bp)
ATCAAATCTTGACGGCGTTGACCTG
LOC_Os07g43810
Os.14271.1.S1_at--1117--6291Chr07:26211987..26212011 (25 bp)
GATGATGTGCTTCCAAGATGTTAGT
LOC_Os07g43810
Os.14271.1.S1_at--139--6971Chr07:26212014..26212038 (25 bp)
GTAGCTTCTACTATTGTACACCAAT
LOC_Os07g43810
Os.14271.1.S1_at--977--6531Chr07:26212105..26212129 (25 bp)
GATTTTTCCCCAAAGATGCAATATG
LOC_Os07g43810
Os.14271.1.S1_at--292--6331Chr07:26212119..26212143 (25 bp)
GATGCAATATGCACAGATCCTCTTG
LOC_Os07g43810
Target Sequence 
ATTCCAAGGAAGACCTCTGAGGGTAAACTCAGGGCCGCCTCCGCCTCGGGATGATTTCGCGCCAAGATCACCTAGGGGTG
GTGGGAGCAACTTTGATTCATCCAACAAGCTCTATGTAGGGAACCTTGCTTGGGGTGTCGACAACTCGACACTCGAGAAC
CTGTTCAGTGAGCAGGGAACCGTGCTCGATGCCNAGGTCATCTACGACAGGGAGAGCGGCAGGTCGAGGGGTTTTGGTTT
TGTCACCTATGGCTCCGCTGAAGAAGTCAACAATGCCATATCAAATCTTGACGGCGTTGACCTGGACGGCAGGCAGATCC
GAGTTACAGTTGCAGAATCAAAGCCAAGGCGNCCAATTTTGAGATTTTTTTTTNGGTTATGTTGATTTAGAGGTTGATGA
TGTGCTTCCAAGATGTTAGTTTGTAGCTTCTACTATTGTACACCAATATGGCGAAAAGGAAAATTGATGCGGTTGATGAG
AGACTGAAAGTCTGAAATTGTACACNGAGGGGAAGATTTTTCCCCAAAGATGCAATATGCACAGATCCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis