Browse Element(s) Details


Os.23682.1.S1_s_at

Description gb:AK102629.1
DB_XREF= gi:32987838
TID=Os.23682.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.18 (P0519E12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099L01, full insert sequence.
FL= gb:AK058943.1 gb:AK102629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4387011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43800Os.37996.1.S1_at11/117+26206842..26207760EF hand family protein, expressed
LOC_Os07g43810Os.14271.1.S1_at11/117+26210054..2621214729 kDa ribonucleoprotein A, chloroplast precursor, putative, expressed
LOC_Os07g43820Os.41106.1.S1_at11/117+26213400..26214563Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os07g43830OsAffx.28890.1.S1_at9/117+26215878..26217250expressed protein
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23682.1.S1_s_at--986--5931Chr07:26237963..26237987 (25 bp)
GAGCAGTGGATTTCATTTCGGAGAT
LOC_Os07g43870
Os.23682.1.S1_s_at--420--10611Chr07:26237979..26238003 (25 bp)
TTCGGAGATTACCTGACTGACCCAA
LOC_Os07g43870
Os.23682.1.S1_s_at--506--8931Chr07:26237996..26238020 (25 bp)
TGACCCAAGGATCGGCCCAGCTTTG
LOC_Os07g43870
Os.23682.1.S1_s_at--574--4351Chr07:26238012..26238036 (25 bp)
CCAGCTTTGCTTATGTCTGCATGCA
LOC_Os07g43870
Os.23682.1.S1_s_at--133--8011Chr07:26238713..26238737 (25 bp)
GGATGGAGCACCTCCTAAAGACAAA
LOC_Os07g43870
Os.23682.1.S1_s_at--478--2411Chr07:26238734..26238758 (25 bp)
CAAAACTAAGAAGCGTCGTCCTCGT
LOC_Os07g43870
Os.23682.1.S1_s_at--464--4111Chr07:26238760..26238784 (25 bp)
CGAAGCTTAGCACGTCACTGTTTGG
LOC_Os07g43870
Os.23682.1.S1_s_at--910--9651Chr07:26238774..26238798 (25 bp)
TCACTGTTTGGCCAGCCCGAGTATC
LOC_Os07g43870
Os.23682.1.S1_s_at--19--6911Chr07:26238794..26238818 (25 bp)
GTATCCCGCTGACGCTGATCCTGAA
LOC_Os07g43870
Os.23682.1.S1_s_at--823--6351Chr07:26238810..26238834 (25 bp)
GATCCTGAACCCAAAGATGCTCGTC
LOC_Os07g43870
Os.23682.1.S1_s_at--514--6311Chr07:26238842..26238866 (25 bp)
GATGACTGACTCTGATTCGGACTAG
LOC_Os07g43870
Target Sequence 
GAGCAGTGGATTTCATTTCGGAGATTACCTGACTGACCCAAGGATCGGCCCAGCTTTGCTTATGTCTGCATGCATTTCAA
TGGGAATAATATGGTACAAGAGCAACCAACGAACTCAAACTACGGAGGATGGAGCACCTCCTAAAGACAAAACTAAGAAG
CGTCGTCCTCGTCCGAAGCTTAGCACGTCACTGTTTGGCCAGCCCGAGTATCCCGCTGACGCTGATCCTGAACCCAAAGA
TGCTCGTCAGTGGGAGATGACTGACTCTGATTCGGACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23682.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis