Browse Element(s) Details


OsAffx.16705.1.S1_at

Description tigr:9635.m04404
TID=OsAffx.16705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4390011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16705.1.S1_at--542--8791Chr07:26244142..26244166 (25 bp)
TGTTCTCCCAGTAATAGCTTCATGT
LOC_Os07g43900
OsAffx.16705.1.S1_at--432--771Chr07:26244121..26244145 (25 bp)
ATGTCTGTCTATTCATCGCGATCGA
LOC_Os07g43900
OsAffx.16705.1.S1_at--204--4051Chr07:26244103..26244127 (25 bp)
CGATCGATTGCTACTGCGCGTGGTG
LOC_Os07g43900
OsAffx.16705.1.S1_at--116--3731Chr07:26244093..26244117 (25 bp)
CTACTGCGCGTGGTGTTACGAGTGA
LOC_Os07g43900
OsAffx.16705.1.S1_at--1020--8211Chr07:26244068..26244092 (25 bp)
GGAATTCATGGGAGACCTGACATTT
LOC_Os07g43900
OsAffx.16705.1.S1_at--1129--5991Chr07:26244057..26244081 (25 bp)
GAGACCTGACATTTTATCATGTACA
LOC_Os07g43900
OsAffx.16705.1.S1_at--372--8731Chr07:26244038..26244062 (25 bp)
TGTACAAAATTTAGAGGGCCCCAAG
LOC_Os07g43900
OsAffx.16705.1.S1_at--480--2291Chr07:26244004..26244028 (25 bp)
AAATGGGTACTGTTCTGCTAAAGCA
LOC_Os07g43900
OsAffx.16705.1.S1_at--140--171Chr07:26243948..26243972 (25 bp)
ATTATTGTTGTTAGGTTCCCTGCTC
LOC_Os07g43900
OsAffx.16705.1.S1_at--490--10651Chr07:26243933..26243957 (25 bp)
TTCCCTGCTCTTTTTATGTTTCTTG
LOC_Os07g43900
OsAffx.16705.1.S1_at--802--2291Chr07:26243881..26243905 (25 bp)
AAATGTGCCATGTAATCTGTTTAAA
LOC_Os07g43900
Target Sequence 
TGTTCTCCCAGTAATAGCTTCATGTCTGTCTATTCATCGCGATCGATTGCTACTGCGCGTGGTGTTACGAGTGAGGAATT
CATGGGAGACCTGACATTTTATCATGTACAAAATTTAGAGGGCCCCAAGGAAGGGTCAAAATGGGTACTGTTCTGCTAAA
GCAGATATCTTGTTTTTCTTTTTCTTGAACAATTATTATTGTTGTTAGGTTCCCTGCTCTTTTTATGTTTCTTGAGAATC
AGTACAGTGGATACAGGAAGTAAATGTGCCATGTAATCTGTTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis