Browse Element(s) Details


OsAffx.28893.1.S1_at

Description tigr:9635.m04411
TID=OsAffx.28893.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4396011/11expressed protein
LOC_Os07g439501/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28893.1.S1_at--760--6911Chr07:26270524..26270548 (25 bp)
GTATGCAACTGCTGGAGTACAAACT
LOC_Os07g43960
OsAffx.28893.1.S1_at--81--1451Chr07:26270557..26270581 (25 bp)
AGAAGCCATCACAGGACAGCAAGAG
LOC_Os07g43960
OsAffx.28893.1.S1_at--802--1531Chr07:26270640..26270664 (25 bp)
AGCATGCTTCCTCCGAATATTGTTT
LOC_Os07g43960
OsAffx.28893.1.S1_at--280--6831Chr07:26270661..26270685 (25 bp)
GTTTACCTGATTGCCAGGGCCGAAT
LOC_Os07g43960
OsAffx.28893.1.S1_at--550--1091Chr07:26270676..26270700 (25 bp)
AGGGCCGAATTCATGCATCCCAAGG
LOC_Os07g43960
OsAffx.28893.1.S1_at--661--4971Chr07:26270690..26270714 (25 bp)
GCATCCCAAGGCTTATGTTCTAGCT
LOC_Os07g43960
OsAffx.28893.1.S1_at--1059--5191Chr07:26270769..26270793 (25 bp)
GAATTGGCCCCAGATATCATTTGTA
LOC_Os07g43960
OsAffx.28893.1.S1_at--783--211Chr07:26270787..26270811 (25 bp)
ATTTGTATCCCTGGTAGTGTCTCCC
LOC_Os07g43960
OsAffx.28893.1.S1_at--872--7451Chr07:26270803..26270988 (25 bp)
GTGTCTCCCCAGCATAAGATCAAGG
LOC_Os07g43960
OsAffx.28893.1.S1_at--283--2992Chr07:26271059..26271083 (25 bp)
AATGAGGTCTAGAGCTACCGGTAAT
LOC_Os07g43960
OsAffx.28893.1.S1_at--416--5891Chr07:26271070..26271094 (25 bp)
GAGCTACCGGTAATCTTCAACTTGT
LOC_Os07g43960
Target Sequence 
GTATGCAACTGCTGGAGTACAAACTGCTGCGGAAGAAGCCATCACAGGACAGCAAGAGTGTGTCCACCAACGCAGATTGG
AAATTGGAGAACCTCTGGGTTTCTCAACCCACTCCCAGCATGCTTCCTCCGAATATTGTTTACCTGATTGCCAGGGCCGA
ATTCATGCATCCCAAGGCTTATGTTCTAGCTGTTGACATGATAAAAAGAGAAGTGCATGGTGTGACGGAGTTTGGAACCA
TGAGGGAATTGGCCCCAGATATCATTTGTATCCCTGGTAGTGTCTCCCCAGCATAAGATCAAGGAGCAGGAGCCCGGTCG
AGGAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCTACCGGTAATC
TTCAACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis