Browse Element(s) Details


Os.34315.1.S1_at

Description gb:AK071894.1
DB_XREF= gi:32981917
TID=Os.34315.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.30 (P0519E12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059L02, full insert sequence.
FL= gb:AK071894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4397011/11calmodulin-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34315.1.S1_at--543--5311Chr07:26288849..26288873 (25 bp)
GAAGGAGGCCAAGTCGTACCAGCTG
LOC_Os07g43970
Os.34315.1.S1_at--703--3391Chr07:26288880..26288904 (25 bp)
CAGCTGTCGTTCAAGTGGACCACCG
LOC_Os07g43970
Os.34315.1.S1_at--113--3351Chr07:26288914..26288938 (25 bp)
CACGGATCGTGTGCGTCAGGGACTA
LOC_Os07g43970
Os.34315.1.S1_at--802--8651Chr07:26288923..26288947 (25 bp)
TGTGCGTCAGGGACTACCCGTCGGA
LOC_Os07g43970
Os.34315.1.S1_at--506--5811Chr07:26289086..26289110 (25 bp)
GACGCCGAGAGAGGCATTCCGCTCG
LOC_Os07g43970
Os.34315.1.S1_at--888--91Chr07:26289101..26289125 (25 bp)
ATTCCGCTCGCATCTGCAGCAGGGA
LOC_Os07g43970
Os.34315.1.S1_at--1068--9631Chr07:26289133..26289157 (25 bp)
TCAGGTGAACTGATCATCGCTGGAT
LOC_Os07g43970
Os.34315.1.S1_at--172--3151Chr07:26289183..26289207 (25 bp)
AATTCACCTGTTCTTTGCCTTGAAC
LOC_Os07g43970
Os.34315.1.S1_at--546--8791Chr07:26289191..26289215 (25 bp)
TGTTCTTTGCCTTGAACAGGGTGAT
LOC_Os07g43970
Os.34315.1.S1_at--935--5511Chr07:26289257..26289281 (25 bp)
GAAAATCCTACCCATGTAGATCTTG
LOC_Os07g43970
Os.34315.1.S1_at--514--6951Chr07:26289272..26289296 (25 bp)
GTAGATCTTGTAGTAGAGTCTCAAA
LOC_Os07g43970
Target Sequence 
GAAGGAGGCCAAGTCGTACCAGCTGGGGAAGCAGCTGTCGTTCAAGTGGACCACCGGCGCCGGGCCACGGATCGTGTGCG
TCAGGGACTACCCGTCGGAGCTGCAGCTCCGGGCGCTGGAGCAGGTGCACCTGTCGCCGAGGAGCGCCGCCGCCGCCGCC
GGCGGCAGGCCGTCGTCCCGGTTCGCGTCGCCGCAGAGGTCAAGCAGCCCGATGGCGAGAGGGTGCAGCGAGCCATTGAC
GCCGAGAGAGGCATTCCGCTCGCATCTGCAGCAGGGAGTGCTGATCAGGTGAACTGATCATCGCTGGATGGGGAGTGGAA
AATTGTGATGATACAATTCACCTGTTCTTTGCCTTGAACAGGGTGATGATACAAATTGTGCATAGAAAGAATAAGGGGTG
GGGGTAAAGAAAATCCTACCCATGTAGATCTTGTAGTAGAGTCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis