Browse Element(s) Details


Os.41096.1.S1_at

Description gb:CA766618
DB_XREF= gi:27548626
DB_XREF=AF53-Rpf_12_C10_T7_041.ab1
CLONE=C0004282
TID=Os.41096.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.36 (P0519E12.36), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4402011/11DedA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41096.1.S1_at--973--9831Chr07:26308124..26308148 (25 bp)
TAAAGTACGGCCCTTACATATGCGG
LOC_Os07g44020
Os.41096.1.S1_at--642--6591Chr07:26308092..26308116 (25 bp)
GTTGGAATGGTACCTGACGCCTTAG
LOC_Os07g44020
Os.41096.1.S1_at--3--5811Chr07:26308079..26308101 (23 bp)
GACGCCTTAGTCAACATCTACAGTG
LOC_Os07g44020
Os.41096.1.S1_at--86--451Chr07:26307912..26308086 (25 bp)
ATCTACAGTGGTCGGCTGATACTCA
LOC_Os07g44020
Os.41096.1.S1_at--1021--6471Chr07:26307895..26307919 (25 bp)
GATACTCACACTTGCAGGCCTGAAA
LOC_Os07g44020
Os.41096.1.S1_at--1147--731Chr07:26307830..26307854 (25 bp)
ATGTTATCTCTATTACTGTCGCCTT
LOC_Os07g44020
Os.41096.1.S1_at--893--9911Chr07:26307817..26307841 (25 bp)
TACTGTCGCCTTTCTTGTAGCGATT
LOC_Os07g44020
Os.41096.1.S1_at--500--71Chr07:26307717..26307741 (25 bp)
ATTGCTCATGGCTCAACTGAACTCA
LOC_Os07g44020
Os.41096.1.S1_at--818--5471Chr07:26307699..26307723 (25 bp)
GAACTCAGAGCTCACCATCAAGAAT
LOC_Os07g44020
Os.41096.1.S1_at--308--6751Chr07:26307674..26307698 (25 bp)
GTTCAAATTCCAGCTCTGTACCAAT
LOC_Os07g44020
Os.41096.1.S1_at--169--5511Chr07:26307618..26307642 (25 bp)
GAACACACGCAATCGCTTCAGATGT
LOC_Os07g44020
Target Sequence 
TAAAGTACGGCCCTTACATATGCGGCTCAGTTGTTGGAATGGTACCTGACGCCTTAGTCAACATCTACAGTGGTCGGCTG
ATACTCACACTTGCAGGCCTGAAATACCACAACCATAGATTGACNACTGTGGAGATTGTGTACAATGTTATCTCTATTAC
TGTCGCCTTTCTTGTAGCGATTGGATTTACAGTCTACGCAAAAAGAGCATTGGATGAAATGGAAAGATCAGAGGGCACAT
GCCCTGAACCTGCCGGTATTGCTCATGGCTCAACTGAACTCAGAGCTCACCATCAAGAATGTTCAAATTCCAGCTCTGTA
CCAATAGATGTTGTATAGTAATTTCTTTTACCGTAAGAACACACGCAATCGCTTCAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis