Browse Element(s) Details


Os.6362.1.S1_at

Description gb:AU030671
DB_XREF= gi:3766561
DB_XREF=AU030671
CLONE=E60087_2Z
TID=Os.6362.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU088644(E60087),AU030671(E60087)~ripening-related protein-like (P0455H11.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4406011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6362.1.S1_at--660--931Chr07:26326370..26326394 (25 bp)
AGGCAGCAGTTCTGACAGCTCAGCT
LOC_Os07g44060
Os.6362.1.S1_at--1000--1571Chr07:26326354..26326378 (25 bp)
AGCTCAGCTTCTCATCGCAAGAGGA
LOC_Os07g44060
Os.6362.1.S1_at--355--6191Chr07:26326334..26326358 (25 bp)
GAGGAAGATCCTGTGCAAGCCGTCC
LOC_Os07g44060
Os.6362.1.S1_at--306--5271Chr07:26326306..26326330 (25 bp)
GAATCCATGGAAGCCGTCATCGAGA
LOC_Os07g44060
Os.6362.1.S1_at--868--8791Chr07:26326163..26326187 (25 bp)
TGTTCTTCGACGACAGCCCACGCAA
LOC_Os07g44060
Os.6362.1.S1_at--223--4791Chr07:26325889..26325913 (25 bp)
GCTCCCTTTCCCATGGTATTAATTA
LOC_Os07g44060
Os.6362.1.S1_at--209--4291Chr07:26325843..26325867 (25 bp)
CCTCAATGACACTAGCTTACTGCAA
LOC_Os07g44060
Os.6362.1.S1_at--962--8951Chr07:26325837..26325861 (25 bp)
TGACACTAGCTTACTGCAAAAATCA
LOC_Os07g44060
Os.6362.1.S1_at--889--7351Chr07:26325795..26325819 (25 bp)
GTGAAAAATGGCGTGAGGTGTACTC
LOC_Os07g44060
Os.6362.1.S1_at--655--1051Chr07:26325780..26325804 (25 bp)
AGGTGTACTCGGTGATTTGTGTGAT
LOC_Os07g44060
Os.6362.1.S1_at--146--6531Chr07:26325767..26325791 (25 bp)
GATTTGTGTGATGAATGAACCTGTC
LOC_Os07g44060
Target Sequence 
AGGCAGCAGTTCTGACAGCTCAGCTTCTCATCGCAAGAGGAAGATCCTGTGCAAGCCGTCCCNTGGAATCCATGGAAGCC
GTCATCGAGATCGCCAAGCTCGACGCCATGAAGACGGTGTTCTTCGACGACAGCCCACGCAACATCGCCNCCGGGAAGGC
CGCCGGATTCCACACNGGTGATCGTGGGGAGCTCGGCGNCGGTGGCCGGGGCGGACGTGGCGCTGGAGAGCATCCACAAC
ATCAAGGAGGCGGTGCCGGAGCTGTGGGAGGCCGCCGGCGAGCACGTCCAGGCCCAGCTGGCCCAGGCCGCCGTCGACCT
CCGCTCCGCCGCCNGTCGAGACCACCGTGCTCGCCTGAGCTGCTCAGACGCCGTCCTCCATGTCGCCGTGCATGCTCCCT
TTCCCATGGTATTAATTAATTAGTGGATGATTTTTTTTNCCTCAATGACACTAGCTTACTGCAAAAATCAAGAGAGGGAG
GAAGACGGTGAAAAATGGCGTGAGGTGTACTCGGTGATTTGTGTGATGAATGAACCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis