Browse Element(s) Details


Os.18217.1.S1_s_at

Description gb:AK065122.1
DB_XREF= gi:32975140
TID=Os.18217.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pectin acetylesterase precursor (P0455H11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001O22, full insert sequence.
FL= gb:AK065122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4407011/11pectinacetylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein
LOC_Os07g44090OsAffx.16707.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44090Os.14525.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44100NANA7+26361335..26361745expressed protein
LOC_Os07g44110Os.47310.1.S1_at1/117+26365555..26367364Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18217.1.S1_s_at--290--4271Chr07:26341935..26341959 (25 bp)
CCTGTTTCGCACATTGCCAAAGTGA
LOC_Os07g44070
Os.18217.1.S1_s_at--960--71Chr07:26341986..26342008 (23 bp)
ATTCTCCTCGTCTCGGTAACAAGAG
LOC_Os07g44070
Os.18217.1.S1_s_at--801--871Chr07:26342166..26342190 (25 bp)
AGGCGACTGGTTTTTCGATAGGGCA
LOC_Os07g44070
Os.18217.1.S1_s_at--831--1071Chr07:26342185..26342209 (25 bp)
AGGGCAGACGCGAAGTACACAGACT
LOC_Os07g44070
Os.18217.1.S1_s_at--477--7031Chr07:26342199..26342223 (25 bp)
GTACACAGACTGTGCATACCCTTGT
LOC_Os07g44070
Os.18217.1.S1_s_at--819--311Chr07:26342214..26342238 (25 bp)
ATACCCTTGTGATGGTACCTGCCAT
LOC_Os07g44070
Os.18217.1.S1_s_at--1087--3431Chr07:26342410..26342434 (25 bp)
CAGATATGATCTTAGGGCAGGGCCT
LOC_Os07g44070
Os.18217.1.S1_s_at--1124--711Chr07:26342455..26342479 (25 bp)
ATGATCAGGCCTCTGCATTTAGCTC
LOC_Os07g44070
Os.18217.1.S1_s_at--87--4331Chr07:26342501..26342525 (25 bp)
CCATTGCCTGAATTCCCTGGATGAT
LOC_Os07g44070
Os.18217.1.S1_s_at--280--6891Chr07:26342526..26342550 (25 bp)
GTATCTCTGAACATTTGGACCCCAA
LOC_Os07g44070
Os.18217.1.S1_s_at--894--1151Chr07:26342613..26342637 (25 bp)
AGTAATGTGCCTGCAAGAAACCCAA
LOC_Os07g44070
Target Sequence 
CCTGTTTCGCACATTGCCAAAGTGAGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGAGAATT
GCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAGTACACAGACTGTGCATACCCTTGTGATGGTACCTG
CCATCATCTTACATTCAGGGGAGATTACTAAGATTCATTCTTAGACCACCACCAAATGTAGGTGGCAANNNGAGGGGAAA
AAAGGGACACCCAATGGGAATATATACAGAATANAGAGGAANGGTATAGATAGANGGATGCNAAANGCTANTGNANCTTG
CNNATGGNACNANTGTNTCNTNCANTTACNTCAGATATGATCTTAGGGCAGGGCCTGGTGTGCTTGCTAATGTGGCATGA
TCAGGCCTCTGCATTTAGCTCCACACACCGNTTGATTCTTTTCCATTGCCTGAATTCCCTGGATGATGTATCTCTGAACA
TTTGGACCCCAATGGTGTATCTGTATCATAAATTTACATATCCATGTACTAAACGTGATAATATGAATGAAATAAGTAAT
GTGCCTGCAAGAAACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18217.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis