Browse Element(s) Details


Os.47310.1.S1_at

Description gb:CD670683
DB_XREF= gi:38568468
DB_XREF=OsMR098
TID=Os.47310.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0455H11.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4413010/11Cytochrome P450 family protein, expressed
LOC_Os07g441101/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44090OsAffx.16707.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44090Os.14525.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44100NANA7+26361335..26361745expressed protein
LOC_Os07g44110Os.47310.1.S1_at1/117+26365555..26367364Cytochrome P450 family protein
LOC_Os07g44120OsAffx.28896.1.S1_at11/117+26370301..26371359hypothetical protein
LOC_Os07g44120OsAffx.21755.1.S1_x_at1/117+26370301..26371359hypothetical protein
LOC_Os07g44130Os.47310.1.S1_at10/117+26374057..26375891Cytochrome P450 family protein, expressed
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47310.1.S1_at--258--2711Chr07:26375352..26375376 (25 bp)
AAGCTTGGTAGCATCAAGGTTCCTA
LOC_Os07g44130
Os.47310.1.S1_at--1021--6531Chr07:26375370..26375394 (25 bp)
GTTCCTAAGGGCACCATCCTAACGA
LOC_Os07g44130
Os.47310.1.S1_at--180--1111Chr07:26375477..26375501 (25 bp)
AGTGTTGAATGCAGCGAAGCACCCC
LOC_Os07g44130
Os.47310.1.S1_at--683--9731Chr07:26375621..26375645 (25 bp)
TAAGTACGTCCACACGCCAATCAGT
LOC_Os07g44130
Os.47310.1.S1_at--418--411Chr07:26375640..26375664 (25 bp)
ATCAGTGTGATCACGCTAAGGCCTA
LOC_Os07g44130
Os.47310.1.S1_at--5--8851Chr07:26375656..26375680 (25 bp)
TAAGGCCTAAGTATGGTCTTCCAAT
LOC_Os07g44130
Os.47310.1.S1_at--387--7132Chr07:26375671..26375695 (25 bp)
GTCTTCCAATGATCCTTAGGAGCCT
LOC_Os07g44130
Os.47310.1.S1_at--306--2191Chr07:26375739..26375763 (25 bp)
ACACTTCTTTTTTAGCACTGCTTTG
LOC_Os07g44130
Os.47310.1.S1_at--823--7031Chr07:26375766..26375790 (25 bp)
GTACACGAGTAGTCTTGTTCACAAG
LOC_Os07g44130
Os.47310.1.S1_at--200--8791Chr07:26375781..26375805 (25 bp)
TGTTCACAAGAATTTGCTCCCTAAT
LOC_Os07g44130
Os.47310.1.S1_at--922--2951NONE
AATGGACTGATATATTCGGTTCTAC
NONE
Target Sequence 
AAGCTTGGTAGCATCAAGGTTCCTAAGGGCACCATCCTAACGATCCCNGATCGCAACAATCCACCGTGACAAGGNAAGTG
TGGGGGGAGGACGCCGATGAGTTCAAGCCAGAGAGGNCCGAGAATGGAGTGTTGAATGCAGCGAAGCACCCCAGCGCACT
ACTCTCCTTCTCTATCGGGNCTAAGGTCGTGCATCGGGCNAAAACTTTGNCCATGATCGAGGCCAGGACCATNATCNGCC
ATGATCCTGCAAAGGNTTCTNCCTTCACGTTGNCCCCTAAGTACGTCCACACGCCAATCAGTGTGATCACGCTAAGGCCT
AAGTATGGTCTTCCAATGATCCTTAGGAGCCTCAAGGTAAAGAGAGATAGGTAAGATCCAAGGAATATCTTACTTACACT
TCTTTTTTAGCACTGCTTTGTTGTACACGAGTAGTCTTGTTCACAAGAATTTGCTCCCTAATAATGTTATCGTGTAATGG
ACTGATATATTCGGTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis