Browse Element(s) Details


OsAffx.28896.1.S1_at

Description tigr:9635.m04430
TID=OsAffx.28896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4412011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein
LOC_Os07g44090OsAffx.16707.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44090Os.14525.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44100NANA7+26361335..26361745expressed protein
LOC_Os07g44110Os.47310.1.S1_at1/117+26365555..26367364Cytochrome P450 family protein
LOC_Os07g44120OsAffx.28896.1.S1_at11/117+26370301..26371359hypothetical protein
LOC_Os07g44120OsAffx.21755.1.S1_x_at1/117+26370301..26371359hypothetical protein
LOC_Os07g44130Os.47310.1.S1_at10/117+26374057..26375891Cytochrome P450 family protein, expressed
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28896.1.S1_at--958--6571Chr07:26370549..26370573 (25 bp)
GATTCCATCCTACACATCTTGAGGC
LOC_Os07g44120
OsAffx.28896.1.S1_at--764--2091Chr07:26370536..26370560 (25 bp)
ACATCTTGAGGCTCCTGAGGATCTT
LOC_Os07g44120
OsAffx.28896.1.S1_at--485--6171Chr07:26370520..26370544 (25 bp)
GAGGATCTTTGGGAGACCATACTTG
LOC_Os07g44120
OsAffx.28896.1.S1_at--861--311Chr07:26370502..26370526 (25 bp)
ATACTTGGGCCACAGTGTGATCAAA
LOC_Os07g44120
OsAffx.28896.1.S1_at--440--2391Chr07:26370480..26370504 (25 bp)
AAACTGGTTGGTGCGTGGACATACT
LOC_Os07g44120
OsAffx.28896.1.S1_at--718--5371Chr07:26370439..26370463 (25 bp)
GAAGAACCTTTGCAAGATCATGGTG
LOC_Os07g44120
OsAffx.28896.1.S1_at--963--6431Chr07:26370424..26370448 (25 bp)
GATCATGGTGATGACAGCCTTCGCC
LOC_Os07g44120
OsAffx.28896.1.S1_at--839--2491Chr07:26370396..26370420 (25 bp)
AACATGGCGAAGTTCTGCCCGATGC
LOC_Os07g44120
OsAffx.28896.1.S1_at--88--3791Chr07:26370366..26370390 (25 bp)
CTCGGCCCGCTAGAGAAGGAGAGCA
LOC_Os07g44120
OsAffx.28896.1.S1_at--988--1351Chr07:26370347..26370371 (25 bp)
AGAGCAACGCATTAGGGTTCTTCGC
LOC_Os07g44120
OsAffx.28896.1.S1_at--84--1071Chr07:26370334..26370358 (25 bp)
AGGGTTCTTCGCTTCTTTGGACACT
LOC_Os07g44120
Target Sequence 
GATTCCATCCTACACATCTTGAGGCTCCTGAGGATCTTTGGGAGACCATACTTGGGCCACAGTGTGATCAAACTGGTTGG
TGCGTGGACATACTTGGGGGATAGTGTAAAGAAGAACCTTTGCAAGATCATGGTGATGACAGCCTTCGCCTCCAACATGG
CGAAGTTCTGCCCGATGCACGACCTCGGCCCGCTAGAGAAGGAGAGCAACGCATTAGGGTTCTTCGCTTCTTTGGACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis