Browse Element(s) Details


OsAffx.28895.1.S1_at

Description tigr:9635.m04426
TID=OsAffx.28895.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4408010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein
LOC_Os07g44090OsAffx.16707.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44090Os.14525.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44100NANA7+26361335..26361745expressed protein
LOC_Os07g44110Os.47310.1.S1_at1/117+26365555..26367364Cytochrome P450 family protein
LOC_Os07g44120OsAffx.28896.1.S1_at11/117+26370301..26371359hypothetical protein
LOC_Os07g44120OsAffx.21755.1.S1_x_at1/117+26370301..26371359hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28895.1.S1_at--786--4711Chr07:26345689..26345713 (25 bp)
GCTGGCTGATCGATGCTGCATGCAT
LOC_Os07g44080
OsAffx.28895.1.S1_at--848--8331Chr07:26345692..26345716 (25 bp)
GGCTGATCGATGCTGCATGCATGCA
LOC_Os07g44080
OsAffx.28895.1.S1_at--458--4991NONE
GCATGCGTTGCACTGTTGTATACAT
NONE
OsAffx.28895.1.S1_at--1043--5091Chr07:26346163..26346287 (25 bp)
GCACTGTTGTATACATTGGTTGAAA
LOC_Os07g44080
OsAffx.28895.1.S1_at--801--6511Chr07:26346297..26346321 (25 bp)
GATTTGAAACCCCTAATTCATCGAA
LOC_Os07g44080
OsAffx.28895.1.S1_at--658--5551Chr07:26346302..26346326 (25 bp)
GAAACCCCTAATTCATCGAAAGATC
LOC_Os07g44080
OsAffx.28895.1.S1_at--297--2291Chr07:26346505..26346529 (25 bp)
AAAGGCCAGAGACCCGGCTTATGTT
LOC_Os07g44080
OsAffx.28895.1.S1_at--771--4331Chr07:26346510..26346534 (25 bp)
CCAGAGACCCGGCTTATGTTGAAAG
LOC_Os07g44080
OsAffx.28895.1.S1_at--122--5811Chr07:26346515..26346539 (25 bp)
GACCCGGCTTATGTTGAAAGCTATG
LOC_Os07g44080
OsAffx.28895.1.S1_at--536--7151Chr07:26346583..26346607 (25 bp)
GTCTCAGCCACCGACCAAGAAAGAA
LOC_Os07g44080
OsAffx.28895.1.S1_at--1095--1671Chr07:26346588..26346612 (25 bp)
AGCCACCGACCAAGAAAGAACTACA
LOC_Os07g44080
Target Sequence 
GCTGGCTGATCGATGCTGCATGCATGCATGCGTTGCACTGTTGTATACATTGGTTGAAAATTATATAAGATTTGAAACCC
CTAATTCATCGAAAGATCAAAAAAGGCCAGAGACCCGGCTTATGTTGAAAGCTATGAAAAATAATTTGTTGGAGGGGCCA
GGCCACTGGCCGTCCTTCTGTCTCAGCCACCGACCAAGAAAGAACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis