Browse Element(s) Details


Os.20864.1.A1_at

Description gb:AK109879.1
DB_XREF= gi:32995088
TID=Os.20864.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0455H11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C09, full insert sequence.
FL= gb:AK109879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4405011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20864.1.A1_at--1011--10131Chr07:26323971..26323995 (25 bp)
TATCGTGGTAAGATTACTGCCCCTG
LOC_Os07g44050
Os.20864.1.A1_at--399--1991Chr07:26323956..26323980 (25 bp)
ACTGCCCCTGATTTACTGTTTGATT
LOC_Os07g44050
Os.20864.1.A1_at--380--6791Chr07:26323924..26323948 (25 bp)
GTTATTGCCAATCCACATCAAGAGA
LOC_Os07g44050
Os.20864.1.A1_at--819--291Chr07:26323842..26323866 (25 bp)
ATAGAGCCTGTGTTTCTTTCCATTA
LOC_Os07g44050
Os.20864.1.A1_at--420--9811Chr07:26323775..26323799 (25 bp)
TAACTATCAACACAACCTGCTTGCG
LOC_Os07g44050
Os.20864.1.A1_at--361--9071Chr07:26323758..26323782 (25 bp)
TGCTTGCGTGCATCTTCTGTTTATC
LOC_Os07g44050
Os.20864.1.A1_at--1096--8771Chr07:26323741..26323765 (25 bp)
TGTTTATCGCAGTATCCCTGTCGAT
LOC_Os07g44050
Os.20864.1.A1_at--877--2491Chr07:26323700..26323724 (25 bp)
AACTTTTTCAGGCACTTGACTTCAG
LOC_Os07g44050
Os.20864.1.A1_at--976--4291Chr07:26323506..26323530 (25 bp)
CCTACCACAATATTCCTAGCATTTC
LOC_Os07g44050
Os.20864.1.A1_at--104--4291Chr07:26323492..26323516 (25 bp)
CCTAGCATTTCTTGTGACTTTGCCT
LOC_Os07g44050
Os.20864.1.A1_at--826--9252Chr11:20727151..20727576 (25 bp)
TCCTCTACCACCACGATTTAATATA
NONE
Target Sequence 
TATCGTGGTAAGATTACTGCCCCTGATTTACTGTTTGATTATTTATTGTTATTGCCAATCCACATCAAGAGAATTTAGAG
AATTTACTTCTCTAAATTCCTGTACATCAAGAGAATTTAGCTTGGAGATATAGAGCCTGTGTTTCTTTCCATTATCTAGT
TAAAAAAAACATGTTTGATGTTTACGATTTTAGTTCTAACTATCAACACAACCTGCTTGCGTGCATCTTCTGTTTATCGC
AGTATCCCTGTCGATGAAAAATCCAATTTTTAACTTTTTCAGGCACTTGACTTCAGATNTGGCTCTGTAATTNCACAGAG
CCTGTGCTATCGNAGAACAGGCGGAAAGTTATGACGCAGCCAGTGAGTGAGTGAGTTATTCATTGTAGCGAGACGATGAA
CTCATAATGTCTCGTCATAATGTAATATCAATCATCAGATATCAGTTAGATTAGTAATAGTAAAATCCTACCACAATATT
CCTAGCATTTCTTGTGACTTTGCCTNCGTGCAATATTCCTCTACCACCACGATTTAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20864.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis