Browse Element(s) Details


Os.20297.1.S1_at

Description gb:AK102491.1
DB_XREF= gi:32987700
TID=Os.20297.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Rab GTP-binding protein Rab11a (P0455H11.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094O19, full insert sequence.
FL= gb:AK102491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4404011/11Ras-related protein ARA-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0048219biological_processinter-Golgi cisterna vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005802cellular_componentGolgi trans face
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20297.1.S1_at--452--2931Chr07:26321693..26321717 (25 bp)
AAGGCAAAGCTCTGGCTGAGTCACA
LOC_Os07g44040
Os.20297.1.S1_at--903--831Chr07:26321731..26321755 (25 bp)
ATGGAGACCTCAGCCTTGGACTCAT
LOC_Os07g44040
Os.20297.1.S1_at--1061--1971Chr07:26321750..26321774 (25 bp)
ACTCATCAAATGTCGCGGAAGCTTT
LOC_Os07g44040
Os.20297.1.S1_at--578--7611Chr07:26321866..26321890 (25 bp)
GGGAAACCCGTGATGCTGAGCGACT
LOC_Os07g44040
Os.20297.1.S1_at--885--8791Chr07:26321923..26322104 (25 bp)
TGTTCTTCATAGAGCCTGACCTGAT
LOC_Os07g44040
Os.20297.1.S1_at--447--5651Chr07:26322105..26322129 (25 bp)
GACAGAGCCCTGGTGTAATGCCATG
LOC_Os07g44040
Os.20297.1.S1_at--696--1411Chr07:26322138..26322162 (25 bp)
AGACACATCTGTCCATGTACTGCTT
LOC_Os07g44040
Os.20297.1.S1_at--91--2451Chr07:26322244..26322268 (25 bp)
AAAAGGCGTGTGTGCTTGCTTTCCA
LOC_Os07g44040
Os.20297.1.S1_at--796--6851Chr07:26322288..26322312 (25 bp)
GTATAGTTCGATTGATCCCCTTTCT
LOC_Os07g44040
Os.20297.1.S1_at--147--2571Chr07:26322357..26322381 (25 bp)
AACTGGGCTGTTGTGTCATTCTCTC
LOC_Os07g44040
Os.20297.1.S1_at--21--10591Chr07:26322375..26322399 (25 bp)
TTCTCTCTACATCATTCTAGCCTTA
LOC_Os07g44040
Target Sequence 
AAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTTGGACTCATCAAATGTCGCGGAAGCT
TTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCA
GTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCAT
AGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTT
GGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGG
CGTGTGTGCTTGCTTTCCATCAGAGGAAAANTNTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACG
TGATTGNGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis