Browse Element(s) Details


Os.37692.1.S1_at

Description gb:AK060807.1
DB_XREF= gi:32970825
TID=Os.37692.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G03, full insert sequence.
FL= gb:AK060807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4407011/11pectinacetylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein
LOC_Os07g44090OsAffx.16707.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44090Os.14525.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44100NANA7+26361335..26361745expressed protein
LOC_Os07g44110Os.47310.1.S1_at1/117+26365555..26367364Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37692.1.S1_at--299--2911Chr07:26342353..26342377 (25 bp)
AAGGTATAGATAGAGGATGCAAAGC
LOC_Os07g44070
Os.37692.1.S1_at--1086--1171Chr07:26342360..26342384 (25 bp)
AGATAGAGGATGCAAAGCTAGTGAC
LOC_Os07g44070
Os.37692.1.S1_at--148--1571Chr07:26342375..26342399 (25 bp)
AGCTAGTGACTTGCATGGACATGTT
LOC_Os07g44070
Os.37692.1.S1_at--82--4871Chr07:26342376..26342400 (25 bp)
GCTAGTGACTTGCATGGACATGTTC
LOC_Os07g44070
Os.37692.1.S1_at--557--7371Chr07:26342380..26342404 (25 bp)
GTGACTTGCATGGACATGTTCATCA
LOC_Os07g44070
Os.37692.1.S1_at--435--5691Chr07:26342382..26342406 (25 bp)
GACTTGCATGGACATGTTCATCATT
LOC_Os07g44070
Os.37692.1.S1_at--729--10731Chr07:26342385..26342409 (25 bp)
TTGCATGGACATGTTCATCATTACT
LOC_Os07g44070
Os.37692.1.S1_at--914--4991Chr07:26342387..26342411 (25 bp)
GCATGGACATGTTCATCATTACTCA
LOC_Os07g44070
Os.37692.1.S1_at--192--851Chr07:26342389..26342413 (25 bp)
ATGGACATGTTCATCATTACTCAGA
LOC_Os07g44070
Os.37692.1.S1_at--704--8131Chr07:26342391..26342415 (25 bp)
GGACATGTTCATCATTACTCAGATA
LOC_Os07g44070
Os.37692.1.S1_at--219--6751Chr07:26342397..26342421 (25 bp)
GTTCATCATTACTCAGATATGATCT
LOC_Os07g44070
Target Sequence 
AAGGTATAGATAGAGGATGCAAAGCTAGTGACTTGCATGGACATGTTCATCATTACTCAGATATGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis