Browse Element(s) Details


OsAffx.16707.1.S1_at

Description tigr:9635.m04427
TID=OsAffx.16707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4409011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44070Os.37692.1.S1_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44070Os.18217.1.S1_s_at11/117+26338437..26342661pectinacetylesterase, putative, expressed
LOC_Os07g44080OsAffx.28895.1.S1_at10/117+26345657..26348531hypothetical protein
LOC_Os07g44090OsAffx.16707.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44090Os.14525.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44100NANA7+26361335..26361745expressed protein
LOC_Os07g44110Os.47310.1.S1_at1/117+26365555..26367364Cytochrome P450 family protein
LOC_Os07g44120OsAffx.28896.1.S1_at11/117+26370301..26371359hypothetical protein
LOC_Os07g44120OsAffx.21755.1.S1_x_at1/117+26370301..26371359hypothetical protein
LOC_Os07g44130Os.47310.1.S1_at10/117+26374057..26375891Cytochrome P450 family protein, expressed
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16707.1.S1_at--840--4211Chr07:26355227..26355251 (25 bp)
CCGCCGGAGAGCTATGATGGCAGCC
LOC_Os07g44090
OsAffx.16707.1.S1_at--174--4871Chr07:26355237..26355261 (25 bp)
GCTATGATGGCAGCCGGTACAGCAC
LOC_Os07g44090
OsAffx.16707.1.S1_at--1009--7011Chr07:26355316..26355340 (25 bp)
GTACAGCCAAGCGACAGCGGAGTTC
LOC_Os07g44090
OsAffx.16707.1.S1_at--844--4671Chr07:26355434..26355458 (25 bp)
GCGGTTATCCCGTCGGTGTCGAGCT
LOC_Os07g44090
OsAffx.16707.1.S1_at--630--9711Chr07:26355438..26355462 (25 bp)
TTATCCCGTCGGTGTCGAGCTCCAG
LOC_Os07g44090
OsAffx.16707.1.S1_at--834--1491Chr07:26355461..26355485 (25 bp)
AGCACGCTGAACTCGATGGTTGGCC
LOC_Os07g44090
OsAffx.16707.1.S1_at--1093--8971Chr07:26355468..26355492 (25 bp)
TGAACTCGATGGTTGGCCTAAGCCC
LOC_Os07g44090
OsAffx.16707.1.S1_at--980--9371Chr07:26355473..26355497 (25 bp)
TCGATGGTTGGCCTAAGCCCCGCCG
LOC_Os07g44090
OsAffx.16707.1.S1_at--301--4091Chr07:26355520..26355544 (25 bp)
CGACGAGCAGTACGGCAACACCAAC
LOC_Os07g44090
OsAffx.16707.1.S1_at--777--3491Chr07:26355552..26355576 (25 bp)
CATGGCTGGAGCTGGGCCCAAGCAC
LOC_Os07g44090
OsAffx.16707.1.S1_at--1006--5771Chr07:26355635..26355659 (25 bp)
GACGAGCTCAAGTGGTCCGATTACG
LOC_Os07g44090
Target Sequence 
CCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTGTCGTC
GCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGGCGGCG
GCGGCCCCACCTCCTCCGGTGGTGGCGCCCCGCCGGCGCCCACGGCGGCGGTTATCCCGTCGGTGTCGAGCTCCAGCACG
CTGAACTCGATGGTTGGCCTAAGCCCCGCCGCCACCACCACCACCACCACCACCGACGAGCAGTACGGCAACACCAACCA
CCTCCCATGGCTGGAGCTGGGCCCAAGCACCACCACCCCCTCCTCCTCCGCCGCCGCCGCCACGTTCGACCACTACGGCG
CCGCGCTGGACGAGCTCAAGTGGTCCGATTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis