Browse Element(s) Details


Os.9067.1.S1_at

Description gb:AK121733.1
DB_XREF= gi:37991356
TID=Os.9067.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OJ1332_C12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033083C10, full insert sequence.
FL= gb:AK106081.1 gb:AK121733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4414011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44090OsAffx.16707.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44090Os.14525.1.S1_at11/117+26354194..26356351Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g44100NANA7+26361335..26361745expressed protein
LOC_Os07g44110Os.47310.1.S1_at1/117+26365555..26367364Cytochrome P450 family protein
LOC_Os07g44120OsAffx.28896.1.S1_at11/117+26370301..26371359hypothetical protein
LOC_Os07g44120OsAffx.21755.1.S1_x_at1/117+26370301..26371359hypothetical protein
LOC_Os07g44130Os.47310.1.S1_at10/117+26374057..26375891Cytochrome P450 family protein, expressed
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative
LOC_Os07g44180Os.46402.1.S1_at11/117+26401979..26403015Hydrophobic protein LTI6B, putative, expressed
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9067.1.S1_at--118--8471Chr07:26382367..26382391 (25 bp)
TGGCCCTGTTGCATTCATACAGAGG
LOC_Os07g44140
Os.9067.1.S1_at--1145--9851Chr07:26382384..26382408 (25 bp)
TACAGAGGAGGGTCAACGCCGAGCT
LOC_Os07g44140
Os.9067.1.S1_at--854--1071Chr07:26382435..26382459 (25 bp)
AGGGCACTGTCCTATCGATTCCGAT
LOC_Os07g44140
Os.9067.1.S1_at--425--6591Chr07:26382457..26382481 (25 bp)
GATTGCAACAATCCACCGCGATAAG
LOC_Os07g44140
Os.9067.1.S1_at--103--8171Chr07:26382548..26382572 (25 bp)
GGAAAATATCCCAACGCGTTGCTCT
LOC_Os07g44140
Os.9067.1.S1_at--27--6231Chr07:26382623..26382647 (25 bp)
GAGGCCAAGGCCGTAATTGCAATGA
LOC_Os07g44140
Os.9067.1.S1_at--170--2152Chr07:26382652..26382676 (25 bp)
ACAGAGGTTCTCCTTTACTCTATCA
LOC_Os07g44140
Os.9067.1.S1_at--1101--7391Chr07:26382704..26382728 (25 bp)
GTGATCACGCTTCGGCCAAAGTATG
LOC_Os07g44140
Os.9067.1.S1_at--133--2331Chr07:26382721..26382745 (25 bp)
AAAGTATGGGCTGCCTATGATCCTC
LOC_Os07g44140
Os.9067.1.S1_at--185--1871Chr07:26382810..26382834 (25 bp)
ACGAGATTAGTTTTTGTTCATGAGC
LOC_Os07g44140
Os.9067.1.S1_at--769--4951Chr07:26382833..26382857 (25 bp)
GCATTTGCTCCTACTGATGATGTTA
LOC_Os07g44140
Target Sequence 
TGGCCCTGTTGCATTCATACAGAGGAGGGTCAACGCCGAGCTAGAACTCGGCGGCATCACGGTCCCTGAGGGCACTGTCC
TATCGATTCCGATTGCAACAATCCACCGCGATAAGGAGGTGTGGGGCGAGGACGCCGACATATTCAAGCCGGAGAGGTTC
AAGAATGGGGTGTCAAAGGCGGGAAAATATCCCAACGCGTTGCTCTCCTTCTCCAGTGGGCCGAGGGCATGCATTGGGCA
GAACTTCGCCATGATCGAGGCCAAGGCCGTAATTGCAATGATCCTACAGAGGTTCTCCTTTACTCTATCACCCAAGTACG
TCCACGTGCCAACCGACGTGATCACGCTTCGGCCAAAGTATGGGCTGCCTATGATCCTCAAGAGTCTCAAGGTGTAGAAG
TTGTTCATTAGGAGGGGGTTATTTTAGTACTTCTTTGTTGTACACGAGATTAGTTTTTGTTCATGAGCATTTGCTCCTAC
TGATGATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis