Browse Element(s) Details


Os.46402.1.S1_at

Description gb:AY554050.1
DB_XREF= gi:45602862
GEN=DRR1
TID=Os.46402.1
CNT=42
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.46402 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) drought-induced hydrophobic protein (DRR1) mRNA, complete cds.
PROD=drought-induced hydrophobic protein
FL= gb:AK121089.1 gb:AY554050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4418011/11Hydrophobic protein LTI6B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative
LOC_Os07g44180Os.46402.1.S1_at11/117+26401979..26403015Hydrophobic protein LTI6B, putative, expressed
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46402.1.S1_at--65--9511Chr07:26402018..26402042 (25 bp)
TCTCAGCTTGGAGCTCAGTCTTTGA
LOC_Os07g44180
Os.46402.1.S1_at--976--411Chr07:26402358..26402382 (25 bp)
ATCATCTACGCTGTCTGGGTCATCA
LOC_Os07g44180
Os.46402.1.S1_at--1128--6151Chr07:26402391..26402415 (25 bp)
GAGGAGAATTACTACCCTTCCAAGG
LOC_Os07g44180
Os.46402.1.S1_at--795--31Chr07:26402724..26402748 (25 bp)
ATTGGTGATCCGGAGCCTGTGATTG
LOC_Os07g44180
Os.46402.1.S1_at--657--4271Chr07:26402739..26402763 (25 bp)
CCTGTGATTGGTTGTGCCTGGTGTA
LOC_Os07g44180
Os.46402.1.S1_at--158--7411Chr07:26402783..26402807 (25 bp)
GTGATTTTCTGGTTCTTTGGACGGA
LOC_Os07g44180
Os.46402.1.S1_at--1147--4131Chr07:26402815..26402839 (25 bp)
CGCTGTGGTGTTGTGTATGCTGTAC
LOC_Os07g44180
Os.46402.1.S1_at--151--10351Chr07:26402845..26402869 (25 bp)
TTTTGGTGTTTGTGCTTAGGTCCCT
LOC_Os07g44180
Os.46402.1.S1_at--782--3271Chr07:26402879..26402903 (25 bp)
CAACAATTGTTTTCTCCCTGTTCTT
LOC_Os07g44180
Os.46402.1.S1_at--494--7691Chr07:26402907..26402931 (25 bp)
GGGTACCTTCTCCAGTTTATCTTCT
LOC_Os07g44180
Os.46402.1.S1_at--637--3651Chr07:26402936..26402960 (25 bp)
CTTCTCGTCCCTGTACTTTGAATAT
LOC_Os07g44180
Target Sequence 
TCTCAGCTTGGAGCTCAGTCTTTGATTTTTCTTCTTCTTCTTGTTTGTGCAATTGTGCATCGTTGTTAGCTGGGAACAAG
CAGAAGAATGGCGGACAGCACGGCGACCTGCATCGACATCATCCTCGCCATCATCCTGCCGCCGCTCGGCGTCTTCTTCA
AGTTCGGCTGCGGGATTGAGTTCTGGATCTGCTTGCTGCTCACCTTCTTCGGCTACCTCCCCGGCATCATCTACGCTGTC
TGGGTCATCACCAAGTAGGAGGAGAATTACTACCCTTCCAAGGTGATGGTGAATTGGTGATCCGGAGCCTGTGATTGGTT
GTGCCTGGTGTAAGCGGCAGTTGTCAAAGCTGTGATTTTCTGGTTCTTTGGACGGATGGTGCTCGCTGTGGTGTTGTGTA
TGCTGTACATCTGTTTTGGTGTTTGTGCTTAGGTCCCTCTTCTGTTACAACAATTGTTTTCTCCCTGTTCTTCCGGGGTA
CCTTCTCCAGTTTATCTTCTGCACCTTCTCGTCCCTGTACTTTGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis